RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CARD10Q9BWT7 1032 aa11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 SEC31AO94979 1220 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 DYNC1I2Q13409 638 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-203ENST00000396595 SERPINI2O75830 405 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 RASSF7Q02833 373 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 ZBTB38Q8NAP3 1195 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 PROCA1Q8NCQ7 364 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SAAL1Q96ER3 474 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 AK8Q96MA6 479 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 A0A087WUV0 522 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 IL9RQ01113 521 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 LMNB2Q03252 620 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 RNASELQ05823 741 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 APOA5Q6Q788 366 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 ENOX1Q8TC92 643 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SPATA31E1Q6ZUB1 1445 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 CYP21A2P08686 494 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 KRT81Q14533 505 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 RPS6KA2Q15349 733 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 KCTD16Q68DU8 428 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 FNBP4Q8N3X1 1017 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 DDX25Q9UHL0 483 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 CLEC11AQ9Y240 323 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 K7ENM7 598 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SYF2O95926 243 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 POLR2BP30876 1174 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 RBL2Q08999 1139 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 BSPRYQ5W0U4 402 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 ICE2Q659A1 982 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 LINC00301Q8NCQ3 95 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 UHMK1Q8TAS1 419 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SDR42E1Q8WUS8 393 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SPZ1Q9BXG8 430 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 HEXIM1O94992 359 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 CD2BP2O95400 341 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 BAG2O95816 211 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 MYL1P05976 194 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 ATF7P17544 494 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 CNGA1P29973 690 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 BFSP1Q12934 665 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 IFT88Q13099 833 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 GJC2Q5T442 439 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 ST7Q9NRC1 585 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 SCOCQ9UIL1 159 aa11.18□□□□□ -0.62
LIMCH1-203ENST00000396595 STAM2O75886 525 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 FMNL1O95466 1100 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 PPM1KQ8N3J5 372 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 P2RX5Q93086 422 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 MAGOHBQ96A72 148 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 JPH2Q9BR39 696 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 SPTLC3Q9NUV7 552 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 GINS2Q9Y248 185 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 SOS2Q07890 1332 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 ENC1O14682 589 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 MAN1A2O60476 641 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 CIAO1O76071 339 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 SLFN14P0C7P3 912 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 E2F4Q16254 413 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 MAN2A1Q16706 1144 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 PTPROQ16827 1216 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 ADAT2Q7Z6V5 191 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 UNC5CLQ8IV45 518 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 GPKOWQ92917 476 aaPredicted RBP eCLIP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 ZNF148Q9UQR1 794 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 DAAM1Q9Y4D1 1078 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 ABCC12Q96J65 1359 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 LIG4P49917 911 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 BPIFB4P59827 614 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 KIF23Q02241 960 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 GNPTABQ3T906 1256 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 DBNLQ9UJU6 430 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 KCNQ3O43525 872 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 HOXA7P31268 230 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 TCP10Q12799 353 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 FAM102BQ5T8I3 360 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 ARMCX5Q6P1M9 558 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 VSTM4Q8IW00 320 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 SUPT20HQ8NEM7 779 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 PLEKHF1Q96S99 279 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 USP40Q9NVE5 1235 aa11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 MRPL11Q9Y3B7 192 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-203ENST00000396595 FOSP01100 380 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 HSPA6P17066 643 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 NSFP46459 744 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PPP2R5CQ13362 524 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 LRRC24Q50LG9 513 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 NUDCD3Q8IVD9 361 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 RIOK1Q9BRS2 568 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 EPB41L5Q9HCM4 733 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PGRMC1O00264 195 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 MFSD14BQ5SR56 506 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 NAA35Q5VZE5 725 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 PDZD4Q76G19 769 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 ATG3Q9NT62 314 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 IVNS1ABPQ9Y6Y0 642 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 SESN3P58005 492 aa11.16□□□□□ -0.62
LIMCH1-203ENST00000396595 ZNF658Q5TYW1 1059 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms