RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 ATF5Q9Y2D1 282 aaPredicted RBP16.82■□□□□ 0.28
CBX3-202ENST00000396386 GDAQ9Y2T3 454 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 PCDHA1Q9Y5I3 950 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 CNTNAP1P78357 1384 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 ATAD5Q96QE3 1844 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 EDIL3O43854 480 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 KLRC4O43908 158 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 RHOBTB3O94955 611 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 TNNT1P13805 278 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 JAG1P78504 1218 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 SPAG1Q07617 926 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 IKQ13123 557 aaPredicted RBP16.82■□□□□ 0.28
CBX3-202ENST00000396386 TBX2Q13207 712 aaPredicted RBP16.82■□□□□ 0.28
CBX3-202ENST00000396386 STIM1Q13586 685 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 SYDE2Q5VT97 1194 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 ARHGEF10LQ9HCE6 1279 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 STK17AQ9UEE5 414 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 USP27XA6NNY8 438 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 BMP3P12645 472 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 AMPD3Q01432 767 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 RRP1BQ14684 758 aaKnown RBP16.81■□□□□ 0.28
CBX3-202ENST00000396386 NR1I3Q14994 352 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 FILIP1LQ4L180 1135 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 APTXQ7Z2E3 356 aaKnown RBP16.81■□□□□ 0.28
CBX3-202ENST00000396386 AGBL3Q8NEM8 1001 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 CDK5RAP3Q96JB5 506 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 NUP88Q99567 741 aaPredicted RBP16.81■□□□□ 0.28
CBX3-202ENST00000396386 AMNQ9BXJ7 453 aa16.81■□□□□ 0.28
CBX3-202ENST00000396386 GTPBP4Q9BZE4 634 aaKnown RBP16.81■□□□□ 0.28
CBX3-202ENST00000396386 PRCPP42785 496 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 AP3B2Q13367 1082 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 R3HDM1Q15032 1099 aaKnown RBP16.8■□□□□ 0.28
CBX3-202ENST00000396386 FKBP1CQ5VVH2 108 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 MCTP2Q6DN12 878 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 ADSSL1Q8N142 457 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 MTMR14Q8NCE2 650 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 C7orf25Q9BPX7 421 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 ANO3Q9BYT9 981 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 TRIM9Q9C026 710 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 EXOC1Q9NV70 894 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 ZBTB12Q9Y330 459 aaPredicted RBP16.8■□□□□ 0.28
CBX3-202ENST00000396386 ASIC1P78348 528 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 PDIA5Q14554 519 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 PTPN21Q16825 1174 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 BTNL9Q6UXG8 535 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 FBXO11Q86XK2 927 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 ANKRD20A12PQ8NF67 263 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 VEZTQ9HBM0 779 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 PIM2Q9P1W9 311 aa16.8■□□□□ 0.28
CBX3-202ENST00000396386 ADD3Q9UEY8 706 aaKnown RBP16.8■□□□□ 0.28
CBX3-202ENST00000396386 LIMA1Q9UHB6 759 aaKnown RBP16.8■□□□□ 0.28
CBX3-202ENST00000396386 DYNC1I1O14576 645 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 PSMA7O14818 248 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 CCP110O43303 1012 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 TGFB2P61812 414 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 GRB10Q13322 594 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 PTPN14Q15678 1187 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 E4F1Q66K89 784 aaPredicted RBP16.79■□□□□ 0.28
CBX3-202ENST00000396386 NYAP1Q6ZVC0 841 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 GIMAP8Q8ND71 665 aaPredicted RBP16.79■□□□□ 0.28
CBX3-202ENST00000396386 SNX29Q8TEQ0 813 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 TMX1Q9H3N1 280 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 TRMT1Q9NXH9 659 aaKnown RBP16.79■□□□□ 0.28
CBX3-202ENST00000396386 ZBTB21Q9ULJ3 1066 aa16.79■□□□□ 0.28
CBX3-202ENST00000396386 POTEMA6NI47 508 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L15C9J2P7 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L13C9JLJ4 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L11C9JVI0 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L18D6R9N7 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L22D6RA61 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L17D6RBQ6 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L19D6RCP7 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L20D6RJB6 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L24Q0WX57 530 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 KRT79Q5XKE5 535 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 USP17L6PQ6QN14 398 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 PNMA5Q96PV4 448 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 A0A1W2PRG0 241 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 KIF2AO00139 706 aaPredicted RBP16.78■□□□□ 0.28
CBX3-202ENST00000396386 MARCH6O60337 910 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 GTF2F1P35269 517 aaKnown RBP eCLIP16.78■□□□□ 0.28
CBX3-202ENST00000396386 PPP1R2P41236 205 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 PDE4DQ08499 809 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 KRT31Q15323 416 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 TMEM119Q4V9L6 283 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 CEP135Q66GS9 1140 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 MOXD1Q6UVY6 613 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 SV2BQ7L1I2 683 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 FAM83AQ86UY5 434 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 FCHSD1Q86WN1 690 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 PPP1R13BQ96KQ4 1090 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 GOPCQ9HD26 462 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 MAPK8IP1Q9UQF2 711 aa16.78■□□□□ 0.28
CBX3-202ENST00000396386 KDM3AQ9Y4C1 1321 aa16.77■□□□□ 0.28
CBX3-202ENST00000396386 KCNJ18B7U540 433 aa16.77■□□□□ 0.27
CBX3-202ENST00000396386 H7C1D1 291 aa16.77■□□□□ 0.27
CBX3-202ENST00000396386 COBLO75128 1261 aa16.77■□□□□ 0.27
CBX3-202ENST00000396386 PBX1P40424 430 aa16.77■□□□□ 0.27
CBX3-202ENST00000396386 USP11P51784 963 aa16.77■□□□□ 0.27
CBX3-202ENST00000396386 GOLGA8FQ08AF8 430 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms