RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TRIML1Q8N9V2 468 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 AGBL3Q8NEM8 1001 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 CCDC51Q96ER9 411 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MAP3K14Q99558 947 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MAN1B1Q9UKM7 699 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MYO6Q9UM54 1294 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 TARSL2A2RTX5 802 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 TFRCP02786 760 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 CCT5P48643 541 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 RBL2Q08999 1139 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 TBC1D10BQ4KMP7 808 aaPredicted RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 SBK1Q52WX2 424 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 APTXQ7Z2E3 356 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 PPFIBP1Q86W92 1011 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 OGFOD1Q8N543 542 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 PRPF38AQ8NAV1 312 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 MED15Q96RN5 788 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 ALG1Q9BT22 464 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 DNAJC18Q9H819 358 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 MYOZ2Q9NPC6 264 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 GJB4Q9NTQ9 266 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 ARPP21Q9UBL0 812 aaPredicted RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.45□□□□□ -0.423e-7■■■□□ 17.9
CUX1-204ENST00000393824 MYO3BQ8WXR4 1341 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 PCNTO95613 3336 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 TCP10L2B9ZVM9 353 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 FGRP09769 529 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 ERCC5P28715 1186 aaPredicted RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 EIF6P56537 245 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 STIM1Q13586 685 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 MORC3Q14149 939 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 FAM76AQ8TAV0 307 aa12.45□□□□□ -0.42
CUX1-204ENST00000393824 ZBED3Q96IU2 234 aaPredicted RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 ATXN2Q99700 1313 aaKnown RBP12.45□□□□□ -0.42
CUX1-204ENST00000393824 MFAP3LO75121 409 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 PLCG2P16885 1265 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 EPS15P42566 896 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 PPFIA1Q13136 1202 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 DLGAP5Q15398 846 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 KRT40Q6A162 431 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 TRPM4Q8TD43 1214 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 KAT14Q9H8E8 782 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 SAMSN1Q9NSI8 373 aaKnown RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 CNOT7Q9UIV1 285 aaKnown RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 NAV1Q8NEY1 1877 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 AGPSO00116 658 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 RANBP6O60518 1105 aaKnown RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 RXRAP19793 462 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 ARHGAP25P42331 645 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 ZNF280AP59817 542 aaPredicted RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 TRDNQ13061 729 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 TNIP1Q15025 636 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 FBXW10Q5XX13 1052 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 KANK3Q6NY19 840 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 GBP6Q6ZN66 633 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 TMTC1Q8IUR5 882 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 CNGA4Q8IV77 575 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 IGDCC4Q8TDY8 1250 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 MYL10Q9BUA6 226 aa12.44□□□□□ -0.42
CUX1-204ENST00000393824 ZNF70Q9UC06 446 aaPredicted RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 ANGEL1Q9UNK9 670 aaKnown RBP12.44□□□□□ -0.42
CUX1-204ENST00000393824 CNTNAP1P78357 1384 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 STK36Q9NRP7 1315 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 TEX33O43247 280 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 INPP5BP32019 993 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 GGCXP38435 758 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 POSTNQ15063 836 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 DLK2Q6UY11 383 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 KRI1Q8N9T8 703 aaKnown RBP12.43□□□□□ -0.42
CUX1-204ENST00000393824 TMEM87BQ96K49 555 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 RPGRIP1Q96KN7 1286 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 IDI2Q9BXS1 227 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 FOCADQ5VW36 1801 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 A6NNZ2 444 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 FOXN1O15353 648 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 EIF3HO15372 352 aaKnown RBP eCLIP12.43□□□□□ -0.421e-7■■■□□ 16.5
CUX1-204ENST00000393824 METAP2P50579 478 aaKnown RBP eCLIP12.43□□□□□ -0.423e-6■■■■□ 24.7
CUX1-204ENST00000393824 HIRAP54198 1017 aaPredicted RBP12.43□□□□□ -0.42
CUX1-204ENST00000393824 GABPAQ06546 454 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 TRIM29Q14134 588 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 TUBB8Q3ZCM7 444 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 TRAPPC11Q7Z392 1133 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 CLEC10AQ8IUN9 316 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 ZNF579Q8NAF0 562 aaKnown RBP12.43□□□□□ -0.42
CUX1-204ENST00000393824 TMEM39BQ9GZU3 492 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 VEZTQ9HBM0 779 aa12.43□□□□□ -0.42
CUX1-204ENST00000393824 ADD3Q9UEY8 706 aaKnown RBP12.43□□□□□ -0.42
CUX1-204ENST00000393824 ROBO3Q96MS0 1386 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 ITIH6Q6UXX5 1313 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 CCDC189A1A4V9 331 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 GOLGA6CA6NDK9 693 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 ABL1P00519 1130 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 GOLGA6DP0CG33 693 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 RASA1P20936 1047 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 MAP2K1Q02750 393 aaPredicted RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 SPDYE2Q495Y8 402 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 NCAPH2Q6IBW4 605 aa12.42□□□□□ -0.42
CUX1-204ENST00000393824 FAM43BQ6ZT52 329 aaPredicted RBP12.42□□□□□ -0.42
CUX1-204ENST00000393824 TRMT44Q8IYL2 757 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms