RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 KIF9Q9HAQ2 790 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 FAF1Q9UNN5 650 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 USP19O94966 1318 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 MRPL46Q9H2W6 279 aaKnown RBP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 F8W8V4 182 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 LAD1O00515 517 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 TTI1O43156 1089 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 SESN3P58005 492 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 MYSM1Q5VVJ2 828 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 MICAL1Q8TDZ2 1067 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 SUN1O94901 812 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP6V1E1P36543 226 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 ARHGEF6Q15052 776 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 ABI1Q8IZP0 508 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 CXorf38Q8TB03 319 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 SUGCTQ9HAC7 445 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 SMYD2Q9NRG4 433 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 PPP2R2CQ9Y2T4 447 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 SCG2P13521 617 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 MX2P20592 715 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 FLAD1Q8NFF5 587 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 JPH2Q9BR39 696 aaPredicted RBP13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 HAUS4Q9H6D7 363 aa13.94□□□□□ -0.18
CCDC88C-204ENST00000389857 WDR17Q8IZU2 1322 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 ZSCAN26Q16670 478 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 FAM173BQ6P4H8 233 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 PARD3BQ8TEW8 1205 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 EIF2AQ9BY44 585 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 MAST1Q9Y2H9 1570 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 GSTA4O15217 222 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 A1BGP04217 495 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 RBM6P78332 1123 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 PDE1BQ01064 536 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 TMTC3Q6ZXV5 915 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 COL17A1Q9UMD9 1497 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 TRAPPC8Q9Y2L5 1435 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 EXOC3L4Q17RC7 722 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 RETREG2Q8NC44 543 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 SYNJ2BP-COX16A0A087WUM0 186 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 H2AFZP0C0S5 128 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 SNCBQ16143 134 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 H2AFVQ71UI9 128 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 IFNL3Q8IZI9 196 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 XAB2Q9HCS7 855 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 COX16Q9P0S2 106 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 STK17AQ9UEE5 414 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 SORBS3O60504 671 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 SEC24BO95487 1268 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP6V1E2Q96A05 226 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 ARHGEF12Q9NZN5 1544 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 CACTINQ8WUQ7 758 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 GDAP1L1Q96MZ0 367 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 SNX25Q9H3E2 840 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 CUEDC2Q9H467 287 aa13.93□□□□□ -0.18
CCDC88C-204ENST00000389857 RSBN1LQ6PCB5 846 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 SEPT9Q9UHD8 586 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 FOSP01100 380 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP1A2P50993 1020 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 OTUD7AQ8TE49 926 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ABCC10Q5T3U5 1492 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ERVV-2B6SEH9 535 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 CPP00450 1065 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 RPS8P62241 208 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 POLA2Q14181 598 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 RYBPQ8N488 228 aaPredicted RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 PNMA1Q8ND90 353 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 CPSF3Q9UKF6 684 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 USP17L12C9JPN9 530 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 KLRF2D3W0D1 207 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 USP17L21D6R901 530 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 NVLO15381 856 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 MED7O43513 233 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 GAP43P17677 238 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 MIS18BP1Q6P0N0 1132 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 PTPN22Q9Y2R2 807 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ARHGEF37A1IGU5 675 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 SPATA1Q5VX52 437 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 EFCAB13Q8IY85 973 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 NT5C1BQ96P26 610 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 CFAP65Q6ZU64 1925 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ICA1Q05084 483 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 ZBTB17Q13105 803 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 RASEFQ8IZ41 740 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 LRRC47Q8N1G4 583 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 CCHCR1Q8TD31 782 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 EFHD1Q9BUP0 239 aa13.92□□□□□ -0.18
CCDC88C-204ENST00000389857 SPDYE2BA6NHP3 402 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 SPDYE6P0CI01 402 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 ME3Q16798 604 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 FAM98CQ17RN3 349 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 SRRM1Q8IYB3 904 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 UBN1Q9NPG3 1134 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 NEURL1BA8MQ27 555 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 APOEP02649 317 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 CMA1P23946 247 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 ADAT2Q7Z6V5 191 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 C17orf53Q8N3J3 647 aaPredicted RBP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 FANCBQ8NB91 859 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms