RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 ZNF554Q86TJ5 538 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 RNF41Q9H4P4 317 aaPredicted RBP12.88□□□□□ -0.35
NPHP4-202ENST00000378161 PREBQ9HCU5 417 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 RMND1Q9NWS8 449 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 ERBB3P21860 1342 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 S100BP04271 92 aaPredicted RBP12.88□□□□□ -0.35
NPHP4-202ENST00000378161 EPS15P42566 896 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 CLCN2P51788 898 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 TNNC1P63316 161 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 TBL3Q12788 808 aaKnown RBP12.88□□□□□ -0.35
NPHP4-202ENST00000378161 MTMR3Q13615 1198 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 TAOK1Q7L7X3 1001 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 SAPCD2Q86UD0 394 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 IP6K1Q92551 441 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 ALG1Q9BT22 464 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 CCT8L1PA6NM43 557 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 G3V3G9 751 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 IKBKBO14920 756 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 LMNAP02545 664 aaKnown RBP12.88□□□□□ -0.35
NPHP4-202ENST00000378161 S100A1P23297 94 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 GSTT1P30711 240 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 ME3Q16798 604 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 DPCR1Q3MIW9 517 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 TMEM67Q5HYA8 995 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 DCAF8Q5TAQ9 597 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 ZBTB3Q9H5J0 574 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 ZSWIM6Q9HCJ5 1215 aa12.88□□□□□ -0.35
NPHP4-202ENST00000378161 CCDC166P0CW27 439 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 CCDC51Q96ER9 411 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 RNPC3Q96LT9 517 aaKnown RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 NUP58Q9BVL2 599 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 ZNF180Q9UJW8 692 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 WWC3Q9ULE0 1092 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 STK10O94804 968 aaKnown RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 SYF2O95926 243 aaKnown RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 GLE1Q53GS7 698 aaKnown RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 MPP4Q96JB8 637 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 HAUS4Q9H6D7 363 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 POLD4Q9HCU8 107 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 MTMR7Q9Y216 660 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 RPAP1Q9BWH6 1393 aaPredicted RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 TXNDC9O14530 226 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 FLT3P36888 993 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 RFC5P40937 340 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 FNTAP49354 379 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 HS2ST1Q7LGA3 356 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 CCDC82Q8N4S0 544 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 LRRC8CQ8TDW0 803 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 MCUR1Q96AQ8 359 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 ATP6V1G3Q96LB4 118 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 FAM192AQ9GZU8 254 aa12.87□□□□□ -0.35
NPHP4-202ENST00000378161 CNOT10Q9H9A5 744 aaKnown RBP12.87□□□□□ -0.35
NPHP4-202ENST00000378161 EFCAB6Q5THR3 1501 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 DPPA5A6NC42 116 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 SHOX2O60902 331 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 FOXD4Q12950 439 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 SLC39A6Q13433 755 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 ARHGEF25Q86VW2 580 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 FAM133AQ8N9E0 248 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 ECT2Q9H8V3 914 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 TMED5Q9Y3A6 229 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 ENC1O14682 589 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 RNMTO43148 476 aaKnown RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 NPTXRO95502 500 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 ADARP55265 1226 aaKnown RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 DNAJC14Q6Y2X3 702 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 LDHAL6AQ6ZMR3 332 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 CAPN12Q6ZSI9 719 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 SESTD1Q86VW0 696 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 DHX40Q8IX18 779 aaKnown RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 NUDCD1Q96RS6 583 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 MACROD2A1Z1Q3 448 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 POTEFA5A3E0 1075 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 TRIM43BA6NCK2 446 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 OPLAHO14841 1288 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 ZBTB43O43298 467 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 DKC1O60832 514 aaKnown RBP eCLIP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 GHRP10912 638 aa12.86□□□□□ -0.35
NPHP4-202ENST00000378161 CCNI2Q6ZMN8 369 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 NOA1Q8NC60 698 aaKnown RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 POLR3CQ9BUI4 534 aaPredicted RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 CPSF1Q10570 1443 aaKnown RBP12.86□□□□□ -0.35
NPHP4-202ENST00000378161 KRT75O95678 551 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 POTEIP0CG38 1075 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 TFCP2Q12800 502 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 KDM7AQ6ZMT4 941 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 NCCRP1Q6ZVX7 275 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 KCTD17Q8N5Z5 321 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 AGAP11Q8TF27 550 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 CCT7Q99832 543 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 ELAC2Q9BQ52 826 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 IRX2Q9BZI1 471 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 TBX22Q9Y458 520 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 NFE2L3Q9Y4A8 694 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 ERCC6L2Q5T890 1561 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 MAGEA13PA6NCF6 341 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 RNF113AO15541 343 aaKnown RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 MARCKSP29966 332 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-202ENST00000378161 ZNF394Q53GI3 561 aa12.85□□□□□ -0.35
NPHP4-202ENST00000378161 CNBD1Q8NA66 436 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms