RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 C1orf53Q5VUE5 145 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 NOL8Q76FK4 1167 aaKnown RBP19.57■□□□□ 0.72
HMGN4-201ENST00000377575 PCSK9Q8NBP7 692 aaKnown RBP19.57■□□□□ 0.72
HMGN4-201ENST00000377575 KLHDC9Q8NEP7 349 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 IGDCC4Q8TDY8 1250 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 NUP133Q8WUM0 1156 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 AMNQ9BXJ7 453 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 PRO3102Q9H379 93 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 SENP2Q9HC62 589 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 PRKAG2Q9UGJ0 569 aa19.57■□□□□ 0.72
HMGN4-201ENST00000377575 BAZ2BQ9UIF8 2168 aaKnown RBP19.56■□□□□ 0.72
HMGN4-201ENST00000377575 A0A1W2PPC1 479 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 ZBTB5O15062 677 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 DDAH1O94760 285 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 TROAPQ12815 778 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 TRAF1Q13077 416 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 EEPD1Q7L9B9 569 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 MTMR8Q96EF0 704 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 TMEM87BQ96K49 555 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 LY9Q9HBG7 655 aa19.56■□□□□ 0.72
HMGN4-201ENST00000377575 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.55■□□□□ 0.72
HMGN4-201ENST00000377575 ACLYP53396 1101 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 PDE4DQ08499 809 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 KCNA10Q16322 511 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 TRIM60Q495X7 471 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 IQSEC1Q6DN90 963 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 TLK2Q86UE8 772 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 ZNF654Q8IZM8 581 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 TMTC2Q8N394 836 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 MAP3K14Q99558 947 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 GDF15Q99988 308 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 STARD7Q9NQZ5 370 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 DDX49Q9Y6V7 483 aaKnown RBP19.55■□□□□ 0.72
HMGN4-201ENST00000377575 KIAA1217Q5T5P2 1943 aa19.55■□□□□ 0.72
HMGN4-201ENST00000377575 MYADML2A6NDP7 307 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 CCDC69A6NI79 296 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 SLC34A2O95436 690 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 KIF5BP33176 963 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 BMP8BP34820 402 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 MAGEA10P43363 369 aaPredicted RBP19.54■□□□□ 0.72
HMGN4-201ENST00000377575 CCSAPQ6IQ19 270 aaPredicted RBP19.54■□□□□ 0.72
HMGN4-201ENST00000377575 TAPT1Q6NXT6 567 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 NFXL1Q6ZNB6 911 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 HOMER1Q86YM7 354 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 CTCFLQ8NI51 663 aaPredicted RBP19.54■□□□□ 0.72
HMGN4-201ENST00000377575 GLT1D1Q96MS3 346 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 AP5M1Q9H0R1 490 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 RIOX1Q9H6W3 641 aa19.54■□□□□ 0.72
HMGN4-201ENST00000377575 GNEQ9Y223 722 aaKnown RBP19.54■□□□□ 0.72
HMGN4-201ENST00000377575 SH2B2O14492 632 aaPredicted RBP19.53■□□□□ 0.72
HMGN4-201ENST00000377575 SMPD1P17405 629 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 EDNRBP24530 442 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 NKX3-2P78367 333 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 GNASQ5JWF2 1037 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 LBHD1Q9BQE6 289 aaPredicted RBP19.53■□□□□ 0.72
HMGN4-201ENST00000377575 PDGFCQ9NRA1 345 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 Q9Y3F1 56 aa19.53■□□□□ 0.72
HMGN4-201ENST00000377575 ZEB2O60315 1214 aa19.52■□□□□ 0.72
HMGN4-201ENST00000377575 CENPBP07199 599 aaPredicted RBP19.52■□□□□ 0.72
HMGN4-201ENST00000377575 ASGR1P07306 291 aa19.52■□□□□ 0.72
HMGN4-201ENST00000377575 LIFRP42702 1097 aa19.52■□□□□ 0.72
HMGN4-201ENST00000377575 FSCN1Q16658 493 aaKnown RBP19.52■□□□□ 0.72
HMGN4-201ENST00000377575 SYTL5Q8TDW5 730 aaPredicted RBP19.52■□□□□ 0.72
HMGN4-201ENST00000377575 NSUN6Q8TEA1 469 aaKnown RBP19.52■□□□□ 0.72
HMGN4-201ENST00000377575 PRDM5Q9NQX1 630 aaPredicted RBP19.52■□□□□ 0.72
HMGN4-201ENST00000377575 PCDHA1Q9Y5I3 950 aa19.52■□□□□ 0.72
HMGN4-201ENST00000377575 ELP1O95163 1332 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 MROH7Q68CQ1 1323 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 CALM1P0DP23 149 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 CALM2P0DP24 149 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 CALM3P0DP25 149 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 FXR1P51114 621 aaKnown RBP eCLIP19.51■□□□□ 0.71
HMGN4-201ENST00000377575 KRT32Q14532 448 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 DUSP28Q4G0W2 176 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 ERICH6BQ5W0A0 696 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 SAMD3Q8N6K7 520 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 PIGSQ96S52 555 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 LZTS2Q9BRK4 669 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 MYL10Q9BUA6 226 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 WDR11Q9BZH6 1224 aa19.51■□□□□ 0.71
HMGN4-201ENST00000377575 MAP3K20Q9NYL2 800 aaKnown RBP19.51■□□□□ 0.71
HMGN4-201ENST00000377575 PNMA6FA0A0J9YX94 578 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 A0A0U1RQG5 324 aaPredicted RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 RBM47A0AV96 593 aaKnown RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 NKRFO15226 690 aaKnown RBP eCLIP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 CTAGE5O15320 804 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 DYNC1LI2O43237 492 aaPredicted RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 CYTH3O43739 400 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 PQBP1O60828 265 aaKnown RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 PPP1R11O60927 126 aaPredicted RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 CFBP00751 764 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 CLTBP09497 229 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 GNAQP50148 359 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 MDM2Q00987 491 aaPredicted RBP19.5■□□□□ 0.71
HMGN4-201ENST00000377575 PPP2R5BQ15173 497 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 SCFD2Q8WU76 684 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 VTI1AQ96AJ9 217 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 NEK1Q96PY6 1258 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 IWS1Q96ST2 819 aa19.5■□□□□ 0.71
HMGN4-201ENST00000377575 RMDN3Q96TC7 470 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms