RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ABL1P00519 1130 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 SETSIPP0DME0 302 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 GARTP22102 1010 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 ALDH1B1P30837 517 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 CHRNA2Q15822 529 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 INAVAQ3KP66 663 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 PARP10Q53GL7 1025 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 HSP90B2PQ58FF3 399 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 DEPDC4Q8N2C3 294 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 PI4KAP1Q8N8J0 262 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 ZSCAN18Q8TBC5 510 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 SLC16A10Q8TF71 515 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 RBM18Q96H35 190 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 ESYT1Q9BSJ8 1104 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 ATP8A2Q9NTI2 1148 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 USP25Q9UHP3 1055 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 WDR81Q562E7 1941 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 MYH4Q9Y623 1939 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 RPS6KA4O75676 772 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 IDEP14735 1019 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 HSPA4P34932 840 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 UBASH3AP57075 661 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 RBM6P78332 1123 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 FXNQ16595 210 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 SPATA1Q5VX52 437 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 B3GNT9Q6UX72 402 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 EEPD1Q7L9B9 569 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 ANKRD42Q8N9B4 389 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 ZNF669Q96BR6 464 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 KIF1BPQ96EK5 621 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 NLRP3Q96P20 1036 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 NAA15Q9BXJ9 866 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 SRRTQ9BXP5 876 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 ZCCHC17Q9NP64 241 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 HERC5Q9UII4 1024 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 SQORQ9Y6N5 450 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 BAZ2AQ9UIF9 1905 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 LOC102724428A0A0B4J2F2 783 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 PAK3O75914 559 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 DDX58O95786 925 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 CCDC159P0C7I6 412 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 RPS2P15880 293 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 MCM4P33991 863 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 HSD17B7P56937 341 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 SIK1P57059 783 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 FKBP1AP62942 108 aaKnown RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 KCNH2Q12809 1159 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 NR6A1Q15406 480 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 GFOD2Q3B7J2 385 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 RTKN2Q8IZC4 609 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 ENAHQ8N8S7 591 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 PLPP7Q8NBV4 271 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 THAP3Q8WTV1 239 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 SLC39A7Q92504 469 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 HOOK2Q96ED9 719 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 EAF1Q96JC9 268 aaPredicted RBP4.53□□□□□ -1.68
MCF2-203ENST00000370576 PRIMPOLQ96LW4 560 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 UROC1Q96N76 676 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 MIS18AQ9NYP9 233 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 PRKAG3Q9UGI9 489 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 NARFQ9UHQ1 456 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 DOCK5Q9H7D0 1870 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 PLIN4Q96Q06 1357 aa4.53□□□□□ -1.68
MCF2-203ENST00000370576 POTEB3A0JP26 581 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 FAM155AB1AL88 458 aaPredicted RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 NBNO60934 754 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 CHMLP26374 656 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 CABP4P57796 275 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 TEFQ10587 303 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 HSP90AA2PQ14568 343 aaPredicted RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 NECTIN1Q15223 517 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 ALX1Q15699 326 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 PKN1Q16512 942 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 ZC3H12BQ5HYM0 836 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 POTEBQ6S5H4 581 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 CCDC73Q6ZRK6 1079 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 NEK10Q6ZWH5 1172 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 HSCBQ8IWL3 235 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 RHPN1Q8TCX5 695 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 XAGE3Q8WTP9 111 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 IPO9Q96P70 1041 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 ASB2Q96Q27 587 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 STK31Q9BXU1 1019 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 ZBTB3Q9H5J0 574 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 ELAC1Q9H777 363 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 SCN4AP35499 1836 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 SGSM2O43147 1006 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 PPFIA3O75145 1194 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 CASQ1P31415 396 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 STIP1P31948 543 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 CXorf57Q6NSI4 855 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 PPP1R42Q7Z4L9 355 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 TIFAQ96CG3 184 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 DDX11Q96FC9 970 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 IWS1Q96ST2 819 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 BICC1Q9H694 974 aaKnown RBP4.52□□□□□ -1.69
MCF2-203ENST00000370576 CAAP1Q9H8G2 361 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 RSAD1Q9HA92 442 aa4.52□□□□□ -1.69
MCF2-203ENST00000370576 TRPV4Q9HBA0 871 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms