RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 USP6NLQ92738 828 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 INTUQ9ULD6 942 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 POLKQ9UBT6 870 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 NFXL1Q6ZNB6 911 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ST13P4Q8IZP2 240 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 RTL9Q8NET4 1388 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 IFIT3O14879 490 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 OTUD6AQ7L8S5 288 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 UBAC1Q9BSL1 405 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ATXN8OSP0DMR3 200 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 IDO1P14902 403 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PHBP35232 272 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 MCM10Q7L590 875 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CHST3Q7LGC8 479 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SLC30A5Q8TAD4 765 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.1□□□□□ -1.753e-6■■□□□ 13.5
SYNE1-207ENST00000367255 ANKIB1Q9P2G1 1089 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TMCO1Q9UM00 188 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 LETM2Q2VYF4 491 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TTC22Q5TAA0 569 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PBKQ96KB5 322 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CDC5LQ99459 802 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 MKNK2Q9HBH9 465 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 DNAAF2Q9NVR5 837 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SPATA31E1Q6ZUB1 1445 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 GUCY2CP25092 1073 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 FOXD4Q12950 439 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CNNM4Q6P4Q7 775 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ZCCHC17Q9NP64 241 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ZRANB1Q9UGI0 708 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ANKRD20A3Q5VUR7 823 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TPH2Q8IWU9 490 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 VCPIP1Q96JH7 1222 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 NRBP1Q9UHY1 535 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TACC3Q9Y6A5 838 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SMIM31A0A1B0GVY4 71 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CCDC69A6NI79 296 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 F8W031 263 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 RGS2P41220 211 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ATP2B2Q01814 1243 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PUF60Q9UHX1 559 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CNPY2Q9Y2B0 182 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ARAP3Q8WWN8 1544 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CUL7Q14999 1698 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 EXOC5O00471 708 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 FIBPO43427 364 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 UBE3BQ7Z3V4 1068 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PYGBP11216 843 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 AFG1LQ8WV93 481 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 MTBPQ96DY7 904 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 FAM83GA6ND36 823 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 PTGS1P23219 599 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TRMT5Q32P41 509 aaKnown RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TCHHL1Q5QJ38 904 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 HAUS3Q68CZ6 603 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 XKRXQ6PP77 449 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 SETD3Q86TU7 594 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 LAMB3Q13751 1172 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 C19orf60Q96EN9 201 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 OSBPL6Q9BZF3 934 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 LRRIQ3A6PVS8 624 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 KARSQ15046 597 aaKnown RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 LONRF3Q496Y0 759 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 SLC9C1Q4G0N8 1177 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TMEM259Q4ZIN3 620 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ARL6IP4Q66PJ3 421 aaKnown RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 CACNA2D2Q9NY47 1150 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 GABBR1Q9UBS5 961 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ABCC1P33527 1531 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ARPC4-TTLL3A0A0A6YYG9 625 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 PDLIM1O00151 329 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 PPP1R42Q7Z4L9 355 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 AKR1B10O60218 316 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 CPP00450 1065 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 BNIP1Q12981 228 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 MAPK6Q16659 721 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 PDZD4Q76G19 769 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TBC1D23Q9NUY8 699 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 SPC25Q9HBM1 224 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ZNF609O15014 1411 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TDRD9Q8NDG6 1382 aaKnown RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 SNX17Q15036 470 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 SMG5Q9UPR3 1016 aaKnown RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 AFMP43652 599 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 PLEKHO1Q53GL0 409 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ATG16L1Q676U5 607 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 NCAPG2Q86XI2 1143 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 GRSF1Q12849 480 aaKnown RBP eCLIP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TIMM50Q3ZCQ8 353 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 HP1BP3Q5SSJ5 553 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 OTUD7BQ6GQQ9 843 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 GTF3C6Q969F1 213 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 MCUR1Q96AQ8 359 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 CCDC127Q96BQ5 260 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 TEX12Q9BXU0 123 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 IMPG2Q9BZV3 1241 aa4.09□□□□□ -1.75
SYNE1-207ENST00000367255 ROPN1BQ9BZX4 212 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-207ENST00000367255 DCTPP1Q9H773 170 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms