RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 IMPACTQ9P2X3 320 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 PNMA3Q9UL41 463 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 STAMBPO95630 424 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 TMEM106CQ9BVX2 250 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 MTRF1LQ9UGC7 380 aaKnown RBP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 V9GYY5 206 aaPredicted RBP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 MMP1P03956 469 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 SFMBT2Q5VUG0 894 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 RAET1EQ8TD07 263 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 CDHR1Q96JP9 859 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 FAM84BQ96KN1 310 aaPredicted RBP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 CUEDC2Q9H467 287 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 ELP3Q9H9T3 547 aa12.77□□□□□ -0.36
SYNE1-204ENST00000367248 DCP1AQ9NPI6 582 aaPredicted RBP12.77□□□□□ -0.36
SYNE1-204ENST00000367248 ERICH4A6NGS2 130 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 CAPN9O14815 690 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 GRIN3BO60391 1043 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 TUBBP07437 444 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 NR5A1Q13285 461 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 ZNF577Q9BSK1 485 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 PANK4Q9NVE7 773 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 PCDHA5Q9Y5H7 936 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 CPDO75976 1380 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 GPSM2P81274 684 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 SPP2Q13103 211 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 PPP1R7Q15435 360 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 SPECC1LQ69YQ0 1117 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 AK8Q96MA6 479 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 XPO4Q9C0E2 1151 aaKnown RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 YWHAEP62258 255 aaKnown RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 UAP1Q16222 522 aaPredicted RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 ODR4Q5SWX8 454 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 ZNF34Q8IZ26 560 aa12.77□□□□□ -0.37
SYNE1-204ENST00000367248 LARP4BQ92615 738 aaKnown RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 SECISBP2LQ93073 1101 aaKnown RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 METTL14Q9HCE5 456 aaKnown RBP12.77□□□□□ -0.37
SYNE1-204ENST00000367248 RRP9O43818 475 aaKnown RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 NAP1L3Q99457 506 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 PLA2G12BQ9BX93 195 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SLC39A2Q9NP94 309 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MYO1AQ9UBC5 1043 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 PPP6R2O75170 966 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 FOXO4P98177 505 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MICALL2Q8IY33 904 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SLC7A3Q8WY07 619 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 GSDMAQ96QA5 445 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SPDYE16A6NNV3 312 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 CAMTA2O94983 1202 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 CBX1P83916 185 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SPDYE2Q495Y8 402 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SCYL2Q6P3W7 929 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 STAG1Q8WVM7 1258 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MTA3Q9BTC8 594 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 TRPM1Q7Z4N2 1603 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 KCNJ18B7U540 433 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 CD2BP2O95400 341 aaKnown RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 P4HA1P13674 534 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 NDUFA8P51970 172 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 KCNJ12Q14500 433 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 BSPRYQ5W0U4 402 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 RRAGAQ7L523 313 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 TBC1D10CQ8IV04 446 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SLITRK6Q9H5Y7 841 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SPATA31A5Q5VU36 1347 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SPATA31A7Q8IWB4 1347 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 SF3B3Q15393 1217 aaKnown RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 PRR5LQ6MZQ0 368 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 EEF2KMTQ96G04 330 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 JPH2Q9BR39 696 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 CD2APQ9Y5K6 639 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 GAS8O95995 478 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 RPN1P04843 607 aaKnown RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MCM6Q14566 821 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MTERF2Q49AM1 385 aa12.76□□□□□ -0.37
SYNE1-204ENST00000367248 NAPGQ99747 312 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-204ENST00000367248 MROH7-TTC4A0A0A0MT08 1334 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 SETBP1Q9Y6X0 1596 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 CHAMP1Q96JM3 812 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 LARGE1O95461 756 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 ADAM9Q13443 819 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 PPP2R5AQ15172 486 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 SLFNL1Q499Z3 407 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 RAVER2Q9HCJ3 691 aaKnown RBP12.75□□□□□ -0.37
SYNE1-204ENST00000367248 MORC3Q14149 939 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 ARMCX5Q6P1M9 558 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 LINC00301Q8NCQ3 95 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 GJA10Q969M2 543 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 CACNB1Q02641 598 aaPredicted RBP12.75□□□□□ -0.37
SYNE1-204ENST00000367248 CCDC51Q96ER9 411 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 CRAMP1Q96RY5 1269 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 TMEM47Q9BQJ4 181 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 INPP5FQ9Y2H2 1132 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 PNMA6FA0A0J9YX94 578 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 TMTC3Q6ZXV5 915 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 SLF1Q9BQI6 1058 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 FAM204AQ9H8W3 233 aa12.75□□□□□ -0.37
SYNE1-204ENST00000367248 RHOXF2BP0C7M4 288 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms