RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RNF186Q9NXI6 227 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 SCN4AP35499 1836 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 CHD4Q14839 1912 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 MYH13Q9UKX3 1938 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 KINO60870 393 aaKnown RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 TMOD1P28289 359 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 UBA7P41226 1012 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 DTHD1Q6ZMT9 781 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 MOB2Q70IA6 237 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 SKAP1Q86WV1 359 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 ACER1Q8TDN7 264 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 P2RX7Q99572 595 aaKnown RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 DDX25Q9UHL0 483 aaKnown RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 TRPC6Q9Y210 931 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 VWA5AO00534 786 aa10.4□□□□□ -0.75
UPF2-202ENST00000357604 AOC2O75106 756 aa10.4□□□□□ -0.75
UPF2-202ENST00000357604 ABCD1P33897 745 aa10.4□□□□□ -0.75
UPF2-202ENST00000357604 GUCY1B3Q02153 619 aa10.4□□□□□ -0.75
UPF2-202ENST00000357604 LDLRAD1Q5T700 205 aa10.4□□□□□ -0.75
UPF2-202ENST00000357604 MTIF3Q9H2K0 278 aaKnown RBP10.4□□□□□ -0.75
UPF2-202ENST00000357604 TBC1D8O95759 1140 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 KCNG4Q8TDN1 519 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 OR6J1Q8NGC5 347 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 ZHX3Q9H4I2 956 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 HMX1Q9NP08 348 aaPredicted RBP10.39□□□□□ -0.75
UPF2-202ENST00000357604 TBC1D22BQ9NU19 505 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 ZNF577Q9BSK1 485 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 SEZ6LQ9BYH1 1024 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.39□□□□□ -0.75
UPF2-202ENST00000357604 H0YCG3 227 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 ADCY3O60266 1144 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 TTC38Q5R3I4 469 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 GPKOWQ92917 476 aaPredicted RBP eCLIP10.39□□□□□ -0.754e-6■■□□□ 12
UPF2-202ENST00000357604 IFT74Q96LB3 600 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 ANO3Q9BYT9 981 aa10.39□□□□□ -0.75
UPF2-202ENST00000357604 NRDCO43847 1150 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 MCM7P33993 719 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 MAP2K5Q13163 448 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 HTATIP2Q9BUP3 242 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 PKD2L1Q9P0L9 805 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 PCDHA6Q9UN73 950 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 PCDHA8Q9Y5H6 950 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 MAFGO15525 162 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 TLR2O60603 784 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 HMGCRP04035 888 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 TFDP1Q14186 410 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 TSG101Q99816 390 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 LBHD1Q9BQE6 289 aaPredicted RBP10.38□□□□□ -0.75
UPF2-202ENST00000357604 VTA1Q9NP79 307 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 SLC17A8Q8NDX2 589 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 RANBP17Q9H2T7 1088 aaKnown RBP10.38□□□□□ -0.75
UPF2-202ENST00000357604 VPS54Q9P1Q0 977 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 POTEIP0CG38 1075 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 POTEJP0CG39 1038 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 CYP2C8P10632 490 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 KRT40Q6A162 431 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 ABRAQ8N0Z2 381 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 PHKBQ93100 1093 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 NAT10Q9H0A0 1025 aaKnown RBP10.38□□□□□ -0.75
UPF2-202ENST00000357604 NT5C3AQ9H0P0 336 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 BARHL2Q9NY43 387 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 NRBP1Q9UHY1 535 aa10.38□□□□□ -0.75
UPF2-202ENST00000357604 CABYRO75952 493 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 FGRP09769 529 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 SFNP31947 248 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 SP4Q02446 784 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 BMS1Q14692 1282 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 NCAPH2Q6IBW4 605 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 DIS3L2Q8IYB7 885 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 C7orf31Q8N865 590 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 FOXP1Q9H334 677 aaPredicted RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 NEMFO60524 1076 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 LPXNO60711 386 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 TM4SF4P48230 202 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 SNAP25P60880 206 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 CEBPZQ03701 1054 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 PRR16Q569H4 304 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 UTP14CQ5TAP6 766 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 GPR142Q7Z601 462 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 LARP6Q9BRS8 491 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 EMILIN3Q9NT22 766 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 GPR25O00155 361 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 TNFAIP2Q03169 654 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 GABPAQ06546 454 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 FIBPO43427 364 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 ZSCAN22P10073 491 aaPredicted RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 CCT6AP40227 531 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 SMTNP53814 917 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 KRT76Q01546 638 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 SH3BP5LQ7L8J4 393 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 NCOA5Q9HCD5 579 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 MAD2L2Q9UI95 211 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 AKR1A1P14550 325 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 CPA1P15085 419 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 EIF2AK2P19525 551 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 EXOSC10Q01780 885 aaKnown RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 LAMC2Q13753 1193 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 CCDC84Q86UT8 332 aaPredicted RBP10.37□□□□□ -0.75
UPF2-202ENST00000357604 CD99L2Q8TCZ2 262 aa10.37□□□□□ -0.75
UPF2-202ENST00000357604 NAV1Q8NEY1 1877 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms