RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NPLOC4Q8TAT6 608 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CD99L2Q8TCZ2 262 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 IPO9Q96P70 1041 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 PARK7Q99497 189 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 LZTS2Q9BRK4 669 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 LLPHQ9BRT6 129 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 ZMYND12Q9H0C1 365 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 PCDHA6Q9UN73 950 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 SMC3Q9UQE7 1217 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 MTMR6Q9Y217 621 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 PCDHA8Q9Y5H6 950 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 ZNFX1Q9P2E3 1918 aaKnown RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 PLXNB2O15031 1838 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 THSD7BQ9C0I4 1608 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 RGS20O76081 388 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CALML3P27482 149 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 NAPAP54920 295 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 IRX5P78411 483 aaPredicted RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 SYTL5Q8TDW5 730 aaPredicted RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 PSTPIP2Q9H939 334 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 ZFYVE28Q9HCC9 887 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 CTDP1Q9Y5B0 961 aaPredicted RBP4.64□□□□□ -1.67
LIG4-201ENST00000356922 MYPNQ86TC9 1320 aa4.64□□□□□ -1.67
LIG4-201ENST00000356922 DNAJC25-GNG10A0A024R161 153 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 MMP1P03956 469 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 PSMC4P43686 418 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 PRAMEF19Q5SWL8 479 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 STK36Q9NRP7 1315 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 MCM3APO60318 1980 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 ADCY6O43306 1168 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 ADORA2AP29274 412 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 HSD17B4P51659 736 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 LBX1P52954 281 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 MRPS9P82933 396 aaKnown RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 SP3Q02447 781 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 PRKCZQ05513 592 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 DIS3L2Q8IYB7 885 aaKnown RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 TRIM22Q8IYM9 498 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 CRYGNQ8WXF5 182 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 USP6NLQ92738 828 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 C8orf76Q96K31 380 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 CFHR5Q9BXR6 569 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 SEC63Q9UGP8 760 aaKnown RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 PNMA3Q9UL41 463 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 IGHA2P01877 340 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 ANP32AP39687 249 aaKnown RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 GCLCP48506 637 aaPredicted RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 NLRP5P59047 1200 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 PABPC4Q13310 644 aaKnown RBP eCLIP4.63□□□□□ -1.67
LIG4-201ENST00000356922 MORN1Q5T089 497 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 EEPD1Q7L9B9 569 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 FAM133AQ8N9E0 248 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 ZCCHC17Q9NP64 241 aaKnown RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 RIC8AQ9NPQ8 531 aa4.63□□□□□ -1.67
LIG4-201ENST00000356922 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.63□□□□□ -1.67
LIG4-201ENST00000356922 VPS37CA5D8V6 355 aaPredicted RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 FAM86B1E9PN63 330 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 STX6O43752 255 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 FAM86B2P0C5J1 330 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 HSPA1AP0DMV8 641 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 HSPA1BP0DMV9 641 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 ELNP15502 786 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 EIF2AK2P19525 551 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 CYP2B6P20813 491 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 PTPREP23469 700 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 FLT3LGP49771 235 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 OAZ1P54368 228 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 ZNF792Q3KQV3 632 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 RNF207Q6ZRF8 634 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 PIK3AP1Q6ZUJ8 805 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 CCAR1Q8IX12 1150 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 ANKRD35Q8N283 1001 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 MB21D1Q8N884 522 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 FAM184AQ8NB25 1140 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 CWC22Q9HCG8 908 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 PDGFCQ9NRA1 345 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 RTEL1Q9NZ71 1219 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 UNC80Q8N2C7 3258 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 KIAA0100Q14667 2235 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 CDKL5O76039 1030 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 SNAI1O95863 264 aaPredicted RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 ITGB5P18084 799 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 ATP2B1P20020 1258 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 U2AF2P26368 475 aaKnown RBP eCLIP4.62□□□□□ -1.67
LIG4-201ENST00000356922 AKAP17AQ02040 695 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 SP2Q02086 613 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 MAP2K1Q02750 393 aaPredicted RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 GRB14Q14449 540 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 INF2Q27J81 1249 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 GJC2Q5T442 439 aaPredicted RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 BLIDQ8IZY5 108 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 ACAD9Q9H845 621 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 PCDHA4Q9UN74 947 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 PRUNE2Q8WUY3 3088 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 PIK3CDO00329 1044 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 BRD1O95696 1058 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 ALDH1A1P00352 501 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 HSPA8P11142 646 aaKnown RBP4.62□□□□□ -1.67
LIG4-201ENST00000356922 CYP2C19P33261 490 aa4.62□□□□□ -1.67
LIG4-201ENST00000356922 HMGN5P82970 282 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms