RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SPATA31D1Q6ZQQ2 1576 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 CACNB1Q02641 598 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-201ENST00000353479 CALCOCO2Q13137 446 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 SSX2IPQ9Y2D8 614 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 UTYO14607 1347 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 MEIS1O00470 390 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 SEPT2Q15019 361 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 TMED8Q6PL24 325 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-201ENST00000353479 WDR11Q9BZH6 1224 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 MYO1AQ9UBC5 1043 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 P4HA1P13674 534 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 C17orf53Q8N3J3 647 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-201ENST00000353479 LINC00301Q8NCQ3 95 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 WRNIP1Q96S55 665 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 CPVLQ9H3G5 476 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 PCDHB6Q9Y5E3 794 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 FAM83BQ5T0W9 1011 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 RNF187Q5TA31 235 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-201ENST00000353479 MAGEF1Q9HAY2 307 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 EIF2AK2P19525 551 aaKnown RBP16.44■□□□□ 0.22
COL17A1-201ENST00000353479 VAV2P52735 878 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 TOB2Q14106 344 aaPredicted RBP16.44■□□□□ 0.22
COL17A1-201ENST00000353479 TMTC3Q6ZXV5 915 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 UBL4BQ8N7F7 174 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 TBC1D16Q8TBP0 767 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 SMIM23A6NLE4 172 aa16.44■□□□□ 0.22
COL17A1-201ENST00000353479 NUCKS1Q9H1E3 243 aaKnown RBP16.43■□□□□ 0.22
COL17A1-201ENST00000353479 MTRF1LQ9UGC7 380 aaKnown RBP16.43■□□□□ 0.22
COL17A1-201ENST00000353479 ZHX2Q9Y6X8 837 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 R3HDM1Q15032 1099 aaKnown RBP16.43■□□□□ 0.22
COL17A1-201ENST00000353479 DCAF4Q8WV16 495 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 CUEDC2Q9H467 287 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 DAPK3O43293 454 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 YARSP54577 528 aaKnown RBP16.43■□□□□ 0.22
COL17A1-201ENST00000353479 MIS18BP1Q6P0N0 1132 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 GRAMD1CQ8IYS0 662 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 NAP1L3Q99457 506 aaPredicted RBP16.43■□□□□ 0.22
COL17A1-201ENST00000353479 TNNC2P02585 160 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 PPP2R3AQ06190 1150 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 SPATA1Q5VX52 437 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 CEP95Q96GE4 821 aa16.43■□□□□ 0.22
COL17A1-201ENST00000353479 KIAA1210Q9ULL0 1709 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 GSG1L2A8MUP6 293 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 SF3B3Q15393 1217 aaKnown RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 POMGNT1Q8WZA1 660 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 CRAMP1Q96RY5 1269 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 STAT1P42224 750 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 GBP6Q6ZN66 633 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 ENAHQ8N8S7 591 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 CCDC26Q8TAB7 109 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 SLC7A3Q8WY07 619 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 PSMB7Q99436 277 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 ZHX1Q9UKY1 873 aaPredicted RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 ANO3Q9BYT9 981 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 AP5M1Q9H0R1 490 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 PRDM10Q9NQV6 1147 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 GJB4Q9NTQ9 266 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 NT5C2P49902 561 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 YWHAEP62258 255 aaKnown RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 U2AF1L4Q8WU68 220 aaKnown RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 ABCC12Q96J65 1359 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 TUBB4BP68371 445 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 GSDMAQ96QA5 445 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 MMS19Q96T76 1030 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 IFIH1Q9BYX4 1025 aaKnown RBP16.42■□□□□ 0.22
COL17A1-201ENST00000353479 ST7Q9NRC1 585 aa16.42■□□□□ 0.22
COL17A1-201ENST00000353479 HNRNPDLO14979 420 aaKnown RBP16.41■□□□□ 0.22
COL17A1-201ENST00000353479 RESTQ13127 1097 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 LRRC41Q15345 812 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 CDHR1Q96JP9 859 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 NACA2Q9H009 215 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 AKT3Q9Y243 479 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 IQSEC2Q5JU85 1478 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 SESTD1Q86VW0 696 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 SMYD4Q8IYR2 804 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-201ENST00000353479 CEP170P1Q96L14 293 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 C1orf112Q9NSG2 853 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 RFX7Q2KHR2 1363 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 OPA1O60313 960 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 TLDC2A0PJX2 215 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 PALM3A6NDB9 673 aaPredicted RBP16.41■□□□□ 0.22
COL17A1-201ENST00000353479 TFDP1Q14186 410 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 IQCDQ96DY2 449 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 NACC1Q96RE7 527 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 RCOR1Q9UKL0 485 aa16.41■□□□□ 0.22
COL17A1-201ENST00000353479 NTSR2O95665 410 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 TMEM191BP0C7N4 346 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 OR8K1Q8NGG5 319 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 METTL14Q9HCE5 456 aaKnown RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ADGRB1O14514 1584 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ARL1P40616 181 aaPredicted RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 EVCP57679 992 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 RNF207Q6ZRF8 634 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 MB21D2Q8IYB1 491 aaPredicted RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 ITSN1Q15811 1721 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 CEP104O60308 925 aa16.4■□□□□ 0.22
COL17A1-201ENST00000353479 N4BP1O75113 896 aaKnown RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 POLR2FP61218 127 aaKnown RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 MRPS9P82933 396 aaKnown RBP16.4■□□□□ 0.22
COL17A1-201ENST00000353479 APOL6Q9BWW8 343 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms