RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ABL1P00519 1130 aa24.39■■□□□ 1.5
SHMT1-202ENST00000352886 BMS1Q14692 1282 aaKnown RBP24.39■■□□□ 1.5
SHMT1-202ENST00000352886 ANKRD40Q6AI12 368 aa24.39■■□□□ 1.5
SHMT1-202ENST00000352886 RSRC2Q7L4I2 434 aaKnown RBP24.39■■□□□ 1.5
SHMT1-202ENST00000352886 TUBGCP2Q9BSJ2 902 aa24.39■■□□□ 1.5
SHMT1-202ENST00000352886 SWAP70Q9UH65 585 aa24.39■■□□□ 1.5
SHMT1-202ENST00000352886 DNM2P50570 870 aa24.39■■□□□ 1.49
SHMT1-202ENST00000352886 ZNF543Q08ER8 600 aa24.39■■□□□ 1.49
SHMT1-202ENST00000352886 TMCO3Q6UWJ1 677 aa24.39■■□□□ 1.49
SHMT1-202ENST00000352886 JMJD4Q9H9V9 463 aa24.39■■□□□ 1.49
SHMT1-202ENST00000352886 LUC7L2Q9Y383 392 aaKnown RBP24.39■■□□□ 1.49
SHMT1-202ENST00000352886 EDIL3O43854 480 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 SHMT1P34896 483 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 GRB10Q13322 594 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 ADGRF4Q8IZF3 695 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 OR8K1Q8NGG5 319 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 HPS3Q969F9 1004 aa24.38■■□□□ 1.49
SHMT1-202ENST00000352886 SRGNP10124 158 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 FXR2P51116 673 aaKnown RBP eCLIP24.37■■□□□ 1.49
SHMT1-202ENST00000352886 TMEM266Q2M3C6 531 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 CNNM4Q6P4Q7 775 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 GPR161Q8N6U8 529 aaKnown RBP24.37■■□□□ 1.49
SHMT1-202ENST00000352886 FHOD1Q9Y613 1164 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 PNMA6FA0A0J9YX94 578 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 TTBK2Q6IQ55 1244 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 CDC42EP5Q6NZY7 148 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 SV2BQ7L1I2 683 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 SLC35F6Q8N357 371 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 KIAA0895Q8NCT3 520 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 CNOT6LQ96LI5 555 aaKnown RBP24.37■■□□□ 1.49
SHMT1-202ENST00000352886 BLOC1S4Q9NUP1 217 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 CAPN11Q9UMQ6 739 aa24.37■■□□□ 1.49
SHMT1-202ENST00000352886 PPP1R2P41236 205 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 ARHGAP25P42331 645 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 TNNI2P48788 182 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 GOLGA1Q92805 767 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 DNAJC7Q99615 494 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 GTPBP4Q9BZE4 634 aaKnown RBP24.36■■□□□ 1.49
SHMT1-202ENST00000352886 CTAGE9A4FU28 777 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 POTEMA6NI47 508 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 MPHOSPH10O00566 681 aaKnown RBP24.36■■□□□ 1.49
SHMT1-202ENST00000352886 PPP1R11O60927 126 aaPredicted RBP24.36■■□□□ 1.49
SHMT1-202ENST00000352886 NDUFA10O95299 355 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 ATP2B2Q01814 1243 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 UBE2SQ16763 222 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 KIF4BQ2VIQ3 1234 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 PROM2Q8N271 834 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 CDK5RAP3Q96JB5 506 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 PNMA5Q96PV4 448 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 EPN1Q9Y6I3 576 aaPredicted RBP24.36■■□□□ 1.49
SHMT1-202ENST00000352886 MYO3BQ8WXR4 1341 aa24.36■■□□□ 1.49
SHMT1-202ENST00000352886 ZRANB2O95218 330 aaKnown RBP eCLIP24.35■■□□□ 1.49
SHMT1-202ENST00000352886 MCM6Q14566 821 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 FAM114A1Q8IWE2 563 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 RABGGTAQ92696 567 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 ZSWIM4Q9H7M6 989 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 QTRT2Q9H974 415 aaKnown RBP24.35■■□□□ 1.49
SHMT1-202ENST00000352886 SLC39A2Q9NP94 309 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 RIC8AQ9NPQ8 531 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 STK17AQ9UEE5 414 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 CDC23Q9UJX2 597 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 BRWD3Q6RI45 1802 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 MYH7BA7E2Y1 1941 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 PNMA6AP0CW24 399 aaPredicted RBP24.35■■□□□ 1.49
SHMT1-202ENST00000352886 SLC16A2P36021 539 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 UTP14CQ5TAP6 766 aaKnown RBP24.35■■□□□ 1.49
SHMT1-202ENST00000352886 LARP4BQ92615 738 aaKnown RBP24.35■■□□□ 1.49
SHMT1-202ENST00000352886 RAB34Q9BZG1 259 aa24.35■■□□□ 1.49
SHMT1-202ENST00000352886 MYMKA6NI61 221 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 HLA-DOAP06340 250 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 CCDC96Q2M329 555 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 TSR1Q2NL82 804 aaKnown RBP24.34■■□□□ 1.49
SHMT1-202ENST00000352886 PPP1R18Q6NYC8 613 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 SRGAP1Q7Z6B7 1085 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 TEKT1Q969V4 418 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 REXO2Q9Y3B8 237 aaKnown RBP24.34■■□□□ 1.49
SHMT1-202ENST00000352886 GREB1LQ9C091 1923 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-202ENST00000352886 G3V3G9 751 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 SLURP2P0DP57 97 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 NPR1P16066 1061 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 MTIF2P46199 727 aaKnown RBP24.34■■□□□ 1.49
SHMT1-202ENST00000352886 TBC1D8BQ0IIM8 1120 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 NFIAQ12857 509 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 DCAF8Q5TAQ9 597 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 APOBEC3HQ6NTF7 200 aaKnown RBP24.34■■□□□ 1.49
SHMT1-202ENST00000352886 C10orf71Q711Q0 1435 aa24.34■■□□□ 1.49
SHMT1-202ENST00000352886 TRIM21P19474 475 aaKnown RBP24.33■■□□□ 1.49
SHMT1-202ENST00000352886 CHMP4BP1P59074 171 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 COBLL1Q53SF7 1204 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 WDR59Q6PJI9 974 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 HHIPL2Q6UWX4 724 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 KCTD1Q719H9 257 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 DYMQ7RTS9 669 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 KRT27Q7Z3Y8 459 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 SNX29Q8TEQ0 813 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 MYO1AQ9UBC5 1043 aa24.33■■□□□ 1.49
SHMT1-202ENST00000352886 PUF60Q9UHX1 559 aaKnown RBP24.33■■□□□ 1.49
SHMT1-202ENST00000352886 SEC31AO94979 1220 aaKnown RBP24.33■■□□□ 1.48
SHMT1-202ENST00000352886 KLK7P49862 253 aa24.33■■□□□ 1.48
SHMT1-202ENST00000352886 GABPB1Q06547 395 aaPredicted RBP24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms