RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SRRM3A6NNA2 597 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 TMCO5BA8MYB1 307 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 BACH1O14867 736 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 TATP17735 454 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 HPDP32754 393 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 KIF11P52732 1056 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SEC23AQ15436 765 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SPA17Q15506 151 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 METTL24Q5JXM2 366 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 KLHDC7AQ5VTJ3 777 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 PPP4R3AQ6IN85 833 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 CCDC121Q6ZUS5 278 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 IFT20Q8IY31 132 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SYNE4Q8N205 404 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 VGLL2Q8N8G2 317 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 RETREG2Q8NC44 543 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 C1orf131Q8NDD1 294 aaKnown RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 TTLL11Q8NHH1 800 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 LRRC15Q8TF66 581 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 ZNF512BQ96KM6 892 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 NUP58Q9BVL2 599 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SLC24A3Q9HC58 644 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 SLC12A6Q9UHW9 1150 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 IQSEC3Q9UPP2 1182 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 PLAAQ9Y263 795 aa7.54□□□□□ -1.2
VPS39-202ENST00000348544 V9GY48 417 aaPredicted RBP7.54□□□□□ -1.2
VPS39-202ENST00000348544 ALS2Q96Q42 1657 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 HMGB1P1B2RPK0 211 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 PPP1R12AO14974 1030 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 ZPR1O75312 459 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 LCA5LO95447 670 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PCCAP05165 728 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 BRD2P25440 801 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 HNRNPH3P31942 346 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 MCM7P33993 719 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 EIF4A3P38919 411 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 CDR1P51861 262 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 RCAN1P53805 252 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PAK2Q13177 524 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 CRYMQ14894 314 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 GLE1Q53GS7 698 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 LMOD2Q6P5Q4 547 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 MAGEC3Q8TD91 643 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 FAM89AQ96GI7 184 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 DCAF5Q96JK2 942 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 CNOT6LQ96LI5 555 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 SCLT1Q96NL6 688 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 ISCA1Q9BUE6 129 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 ACTR5Q9H9F9 607 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 TMBIM4Q9HC24 238 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 NLRP2Q9NX02 1062 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PLAGL2Q9UPG8 496 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 LEMD3Q9Y2U8 911 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 A0A1W2PQJ5 194 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PP2D1A8MPX8 630 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PRPF3O43395 683 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 TRAPPC3O43617 180 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 USO1O60763 962 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 NEBLO76041 1014 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 CSF1RP07333 972 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PAFAH1B1P43034 410 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 SCTRP47872 440 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 IFIT5Q13325 482 aaKnown RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 LRCH2Q5VUJ6 765 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 C2CD5Q86YS7 1000 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 LCORLQ8N3X6 602 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 CSGALNACT2Q8N6G5 542 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 MAGEB6Q8N7X4 407 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 C4orf32Q8N8J7 132 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 OR2W6PQ8NHA6 318 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 TBC1D22AQ8WUA7 517 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 PCMTD1Q96MG8 357 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 ERGIC2Q96RQ1 377 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 UBAC1Q9BSL1 405 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 MAGEC2Q9UBF1 373 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 ZBTB12Q9Y330 459 aaPredicted RBP7.53□□□□□ -1.2
VPS39-202ENST00000348544 SLC4A4Q9Y6R1 1079 aa7.53□□□□□ -1.2
VPS39-202ENST00000348544 TNKSO95271 1327 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ERICH2A1L162 156 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 GMNCA6NCL1 334 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 H0YGN5 161 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 BUB1O43683 1085 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 CLSTN1O94985 981 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 VEGFAP15692 232 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 XBP1P17861 261 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 TMOD1P28289 359 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 ARID4AP29374 1257 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 ECHS1P30084 290 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 HSPA9P38646 679 aaKnown RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 STAT6P42226 847 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 CLNS1AP54105 237 aaKnown RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 CABP4P57796 275 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 UAP1Q16222 522 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 CDC37Q16543 378 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 ACCSLQ4AC99 568 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 FIGNQ5HY92 759 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 NAIF1Q69YI7 327 aaPredicted RBP7.52□□□□□ -1.21
VPS39-202ENST00000348544 PIK3AP1Q6ZUJ8 805 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 TMC4Q7Z404 712 aa7.52□□□□□ -1.21
VPS39-202ENST00000348544 MAATS1Q7Z4T9 603 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms