RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 EYA3Q99504 573 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 SMYD2Q9NRG4 433 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 PANK4Q9NVE7 773 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 MAST3O60307 1309 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 LOC102724159A0A0B4J2E5 919 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 A6NNZ2 444 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 KIF3CO14782 793 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 TEX33O43247 280 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 NDUFA10O95299 355 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 ACSL3O95573 720 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 BCRP11274 1271 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 SCG2P13521 617 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 HMGB2P26583 209 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 GGCXP38435 758 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 DYNLL1P63167 89 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 RESTQ13127 1097 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 PWP2Q15269 919 aaKnown RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 TUBB8Q3ZCM7 444 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 PACSIN2Q9UNF0 486 aaPredicted RBP9.51□□□□□ -0.89
RTN3-202ENST00000339997 AFG3L2Q9Y4W6 797 aa9.51□□□□□ -0.89
RTN3-202ENST00000339997 SH3BP5O60239 455 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 PFDN1O60925 122 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 HP1BP3Q5SSJ5 553 aaPredicted RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 LIN9Q5TKA1 542 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 CADPS2Q86UW7 1296 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 EFCAB13Q8IY85 973 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 SYCE1Q8N0S2 351 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 WDR24Q96S15 920 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.5□□□□□ -0.89
RTN3-202ENST00000339997 RTCBQ9Y3I0 505 aaKnown RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 ZMYM6O95789 1325 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 GTPBP6O43824 516 aaPredicted RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 TROVE2P10155 538 aaKnown RBP eCLIP9.5□□□□□ -0.89
RTN3-202ENST00000339997 RASSF2P50749 326 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 DYNLT1P63172 113 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 NKX1-1Q15270 411 aaPredicted RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 CEP128Q6ZU80 1094 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 SLC4A7Q9Y6M7 1214 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 A0A1W2PQ27 194 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 A0A1W2PQ64 194 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 A0A1W2PQD8 194 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 NCK2O43639 380 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 SLC16A2P36021 539 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 TTBK2Q6IQ55 1244 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 PCIF1Q9H4Z3 704 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 C19orf44Q9H6X5 657 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 PTPRTO14522 1441 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 ADGRL2O95490 1459 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 SASH1O94885 1247 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 NR1D1P20393 614 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 NR2F2P24468 414 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 EXOC3L4Q17RC7 722 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 RFX8Q6ZV50 586 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 CXorf38Q8TB03 319 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 YIPF3Q9GZM5 350 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 NHEJ1Q9H9Q4 299 aaPredicted RBP9.5□□□□□ -0.89
RTN3-202ENST00000339997 ZSWIM5Q9P217 1185 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 STAP2Q9UGK3 403 aa9.5□□□□□ -0.89
RTN3-202ENST00000339997 ABCC1P33527 1531 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 SPECC1L-ADORA2AF8WAN1 911 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 GFPT2O94808 682 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PDHA1P08559 390 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 OR52Z1P0C646 297 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 GTF2IP78347 998 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 NUGGCQ68CJ6 796 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 MCUQ8NE86 351 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 KCNF1Q9H3M0 494 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 SUGCTQ9HAC7 445 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 TSKSQ9UJT2 592 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 LRRD1A4D1F6 860 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 SFI1A8K8P3 1242 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 ICE2Q659A1 982 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 RSAD2Q8WXG1 361 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 FIS1Q9Y3D6 152 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 DAAM1Q9Y4D1 1078 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 hCG_2014768A0A024R1R8 64 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PLCG2P16885 1265 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 YWHAGP61981 247 aaKnown RBP eCLIP9.49□□□□□ -0.89
RTN3-202ENST00000339997 LRRC8CQ8TDW0 803 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 DPF2Q92785 391 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 TRIM4Q9C037 500 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 POLR3EQ9NVU0 708 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 CLASP1Q7Z460 1538 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 GMNNO75496 209 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PPP1R2P41236 205 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 NECTIN1Q15223 517 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 TMED2Q15363 201 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 TAF11Q15544 211 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 FAM102BQ5T8I3 360 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 FAM178BQ8IXR5 827 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PDCD7Q8N8D1 485 aaKnown RBP9.49□□□□□ -0.89
RTN3-202ENST00000339997 PIP4K2CQ8TBX8 421 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 CCT6BQ92526 530 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PDLIM2Q96JY6 352 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 PSTPIP2Q9H939 334 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 INPP5FQ9Y2H2 1132 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 MRFAP1Q9Y605 127 aa9.49□□□□□ -0.89
RTN3-202ENST00000339997 SOS2Q07890 1332 aaPredicted RBP9.49□□□□□ -0.89
RTN3-202ENST00000339997 IQGAP1P46940 1657 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms