RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 IFIT1BQ5T764 474 aaKnown RBP12.18□□□□□ -0.46
RTN3-201ENST00000338850 JAKMIP3Q5VZ66 844 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 GALNT17Q6IS24 598 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 CDC42EP5Q6NZY7 148 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 OTOP1Q7RTM1 612 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 MSL3Q8N5Y2 521 aaKnown RBP12.18□□□□□ -0.46
RTN3-201ENST00000338850 DAGLBQ8NCG7 672 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 FAM151AQ8WW52 585 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 HOOK2Q96ED9 719 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 OTUD5Q96G74 571 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 WRNIP1Q96S55 665 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 CSRNP2Q9H175 543 aa12.18□□□□□ -0.46
RTN3-201ENST00000338850 SYNRGQ9UMZ2 1314 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 LRRC10BA6NIK2 292 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
RTN3-201ENST00000338850 GTF2A2P52657 109 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 CBX1P83916 185 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 NFIAQ12857 509 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 ORC2Q13416 577 aaPredicted RBP12.17□□□□□ -0.46
RTN3-201ENST00000338850 NPY5RQ15761 445 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 E2F4Q16254 413 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 TAF3Q5VWG9 929 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 DCAF15Q66K64 600 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 ERO1BQ86YB8 467 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 HOMER1Q86YM7 354 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 CNGA4Q8IV77 575 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 CD99L2Q8TCZ2 262 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 ZKSCAN4Q969J2 545 aaPredicted RBP12.17□□□□□ -0.46
RTN3-201ENST00000338850 PKNOX2Q96KN3 472 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 MAGEF1Q9HAY2 307 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 RMND1Q9NWS8 449 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 MYO1AQ9UBC5 1043 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 KCNJ14Q9UNX9 436 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 TRIM17Q9Y577 477 aa12.17□□□□□ -0.46
RTN3-201ENST00000338850 AKR1B15C9JRZ8 316 aaPredicted RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 LAD1O00515 517 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 ZRANB2O95218 330 aaKnown RBP eCLIP12.16□□□□□ -0.46
RTN3-201ENST00000338850 TUBBP07437 444 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 CCDC175P0C221 793 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 KIF5BP33176 963 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 LONP1P36776 959 aaKnown RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 GNAQP50148 359 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 CAP1Q01518 475 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 NR5A1Q13285 461 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 PFKFB3Q16875 520 aaPredicted RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 FILIP1LQ4L180 1135 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 TTC38Q5R3I4 469 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 GPR161Q8N6U8 529 aaKnown RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 IQUBQ8NA54 791 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 CTCFLQ8NI51 663 aaPredicted RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 PAGE5Q96GU1 130 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 ZNF341Q9BYN7 854 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 CRNKL1Q9BZJ0 848 aaKnown RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 ADD3Q9UEY8 706 aaKnown RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 FAM198AQ9UFP1 575 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 LIMA1Q9UHB6 759 aaKnown RBP12.16□□□□□ -0.46
RTN3-201ENST00000338850 MRFAP1Q9Y605 127 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 PDE4DIPQ5VU43 2346 aa12.16□□□□□ -0.46
RTN3-201ENST00000338850 TNRC18O15417 2968 aaPredicted RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 MYH8P13535 1937 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 TMEM232C9JQI7 657 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 POTEB2H3BUK9 544 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 SCG2P13521 617 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 CDK11BP21127 795 aaKnown RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 INPP5BP32019 993 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 PPP1R2P41236 205 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 SP3Q02447 781 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 GRIN1Q05586 938 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 TCP10Q12799 353 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 PPIL2Q13356 520 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 TAF1CQ15572 869 aaPredicted RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 RRP12Q5JTH9 1297 aaKnown RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 MIGA2Q7L4E1 593 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 RSRC2Q7L4I2 434 aaKnown RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 ADGRA1Q86SQ6 560 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 DGKHQ86XP1 1220 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 MNS1Q8NEH6 495 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 OXER1Q8TDS5 423 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 UBXN4Q92575 508 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 RABGGTAQ92696 567 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 KIFC2Q96AC6 838 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 NSUN4Q96CB9 384 aaKnown RBP12.15□□□□□ -0.46
RTN3-201ENST00000338850 SHISA4Q96DD7 197 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 MED15Q96RN5 788 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 CABP5Q9NP86 173 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 TOMM22Q9NS69 142 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 TCP11L1Q9NUJ3 509 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 USP40Q9NVE5 1235 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 RWDD2AQ9UIY3 292 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 ZNF112Q9UJU3 913 aa12.15□□□□□ -0.46
RTN3-201ENST00000338850 GAKO14976 1311 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 PPP1R3GB7ZBB8 358 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 IRF6O14896 467 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 MFAP3LO75121 409 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 CETPP11597 493 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 PRPHP41219 470 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 SNAPC2Q13487 334 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 KCNB1Q14721 858 aa12.14□□□□□ -0.47
RTN3-201ENST00000338850 SPTY2D1Q68D10 685 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms