RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CDCA5Q96FF9 252 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 WNK4Q96J92 1243 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 CLMNQ96JQ2 1002 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 AGBL1Q96MI9 1066 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 UIMC1Q96RL1 719 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 WDR18Q9BV38 432 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 TANGO6Q9C0B7 1094 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 RANBP17Q9H2T7 1088 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 RPAP3Q9H6T3 665 aaPredicted RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 GINM1Q9NU53 330 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 FEM1BQ9UK73 627 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 PHIPQ8WWQ0 1821 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 OTOFQ9HC10 1997 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 ZNF536O15090 1300 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 PP2D1A8MPX8 630 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 WDR46O15213 610 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 SLC37A4O43826 429 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 FLOT1O75955 427 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 LETM1O95202 739 aaPredicted RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 BMP15O95972 392 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 MRE11P49959 708 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 BACE1P56817 501 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 TYRO3Q06418 890 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 NOL9Q5SY16 702 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 FAM160B2Q86V87 743 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 LPAR1Q92633 364 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 SYMPKQ92797 1274 aaKnown RBP4.71□□□□□ -1.66
MCF2-201ENST00000338585 GJA10Q969M2 543 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 FERMT2Q96AC1 680 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 SDF4Q9BRK5 362 aa4.71□□□□□ -1.66
MCF2-201ENST00000338585 PAPPA2Q9BXP8 1791 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 ZC3H4Q9UPT8 1303 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 TRAF5O00463 557 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 POLR2DO15514 142 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 NEMFO60524 1076 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 PLA2G6O60733 806 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 MAP3K9P80192 1104 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 MAP1SQ66K74 1059 aaPredicted RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 KRBA2Q6ZNG9 492 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 FCHSD1Q86WN1 690 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 LDHDQ86WU2 507 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 GRAMD1CQ8IYS0 662 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 CPXCR1Q8N123 301 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 ATG4CQ96DT6 458 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 SLF1Q9BQI6 1058 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 ANO3Q9BYT9 981 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 ELP3Q9H9T3 547 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 AS3MTQ9HBK9 375 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 RAVER2Q9HCJ3 691 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 FAM13BQ9NYF5 915 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 SERTAD1Q9UHV2 236 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 AFG3L2Q9Y4W6 797 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 MORC2Q9Y6X9 1032 aaPredicted RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 MYH7BA7E2Y1 1941 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 BIN1O00499 593 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 SNPHO15079 494 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 CTAGE5O15320 804 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 CFBP00751 764 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 OR52Z1P0C646 297 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 CCDC192P0DO97 292 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 PNOCQ13519 176 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 TTLL12Q14166 644 aaPredicted RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 L1TD1Q5T7N2 865 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 ISM2Q6H9L7 571 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 PRPF38AQ8NAV1 312 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 ZC3H15Q8WU90 426 aaKnown RBP4.7□□□□□ -1.66
MCF2-201ENST00000338585 DHX58Q96C10 678 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 HOMER2Q9NSB8 354 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 CCPG1Q9ULG6 757 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 PPP1R9AQ9ULJ8 1098 aa4.7□□□□□ -1.66
MCF2-201ENST00000338585 SCN4AP35499 1836 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 IQCA1LA6NCM1 817 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 NFIBO00712 420 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ACTN4O43707 911 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 PPP1R12BO60237 982 aaPredicted RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 PEX10O60683 326 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ICAM1P05362 532 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 CASP1P29466 404 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 TXKP42681 527 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 USP14P54578 494 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 UBXN2AP68543 259 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ARHGAP4P98171 946 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 KARSQ15046 597 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 ANO6Q4KMQ2 910 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 MUM1L1Q5H9M0 696 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ARL6IP4Q66PJ3 421 aaKnown RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 SASS6Q6UVJ0 657 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 DTHD1Q6ZMT9 781 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 C11orf57Q6ZUT1 292 aaPredicted RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 CNNM3Q8NE01 707 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 CRYGNQ8WXF5 182 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ZFP91Q96JP5 570 aaPredicted RBP4.69□□□□□ -1.66
MCF2-201ENST00000338585 C12orf42Q96LP6 360 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 PLIN2Q99541 437 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 DNAJC25Q9H1X3 360 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 ZNF408Q9H9D4 720 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 SLC38A10Q9HBR0 1119 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 CSADQ9Y600 493 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 PARP14Q460N5 1801 aa4.69□□□□□ -1.66
MCF2-201ENST00000338585 WDR90Q96KV7 1748 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms