RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ZNF536O15090 1300 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 MYH7BA7E2Y1 1941 aa17.53■□□□□ 0.4
LIMS1-202ENST00000338045 SMCHD1A6NHR9 2005 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 SLC37A4O43826 429 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 ICAM1P05362 532 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 SLFN14P0C7P3 912 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 MAP3K9P80192 1104 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 MOXD1Q6UVY6 613 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 DLK2Q6UY11 383 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 LDHDQ86WU2 507 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 CCSER1Q9C0I3 900 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 HOOK1Q9UJC3 728 aaKnown RBP17.52■□□□□ 0.4
LIMS1-202ENST00000338045 PPP1R9AQ9ULJ8 1098 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 MRPL11Q9Y3B7 192 aaKnown RBP17.52■□□□□ 0.4
LIMS1-202ENST00000338045 AFG3L2Q9Y4W6 797 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 SNCAIPQ9Y6H5 919 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 ABCB11O95342 1321 aa17.52■□□□□ 0.4
LIMS1-202ENST00000338045 CYP3A7-CYP3A51PA0A087WV96 503 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 PPP1R12BO60237 982 aaPredicted RBP17.52■□□□□ 0.39
LIMS1-202ENST00000338045 CYP3A7P24462 503 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 E2F4Q16254 413 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 SH3RF1Q7Z6J0 888 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 MBOAT7Q96N66 472 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 DNAJC25Q9H1X3 360 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 TAF1DQ9H5J8 278 aaPredicted RBP17.52■□□□□ 0.39
LIMS1-202ENST00000338045 RPAP3Q9H6T3 665 aaPredicted RBP17.52■□□□□ 0.39
LIMS1-202ENST00000338045 SLC38A10Q9HBR0 1119 aa17.52■□□□□ 0.39
LIMS1-202ENST00000338045 IQCA1LA6NCM1 817 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 POTECB2RU33 542 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 FDX1P10109 184 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 SREBF1P36956 1147 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 PNOCQ13519 176 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 VGLL4Q14135 290 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 POSTNQ15063 836 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 CALCRLQ16602 461 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 DHX58Q96C10 678 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 TANGO6Q9C0B7 1094 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 CBX8Q9HC52 389 aa17.51■□□□□ 0.39
LIMS1-202ENST00000338045 SPDYE3A6NKU9 549 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 FOXN1O15353 648 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 FLOT1O75955 427 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 TXLNAP40222 546 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 ZNF165P49910 485 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 FXR2P51116 673 aaKnown RBP eCLIP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 ARHGAP4P98171 946 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 SH3D19Q5HYK7 790 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 NT5DC1Q5TFE4 455 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 IGSF22Q8N9C0 903 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 IQUBQ8NA54 791 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 CCDC34Q96HJ3 373 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 DDX25Q9UHL0 483 aaKnown RBP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 WDR90Q96KV7 1748 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 PARP14Q460N5 1801 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 SARSP49591 514 aaKnown RBP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 HMGCS2P54868 508 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 PRKG1Q13976 671 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 C11orf57Q6ZUT1 292 aaPredicted RBP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 SPATA20Q8TB22 786 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 ANP32BQ92688 251 aaKnown RBP17.5■□□□□ 0.39
LIMS1-202ENST00000338045 CDCA5Q96FF9 252 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 PNMA2Q9UL42 364 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 PCDHA5Q9Y5H7 936 aa17.5■□□□□ 0.39
LIMS1-202ENST00000338045 GCOM1H8Y6P7 765 aaPredicted RBP17.49■□□□□ 0.39
LIMS1-202ENST00000338045 POLR2MP0CAP2 368 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 CDC25AP30304 524 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 NLRP12P59046 1061 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 GHRHRQ02643 423 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 PDXDC2PQ6P474 469 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 CEP57L1Q8IYX8 460 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 RBM46Q8TBY0 533 aaKnown RBP17.49■□□□□ 0.39
LIMS1-202ENST00000338045 AGBL1Q96MI9 1066 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 CCPG1Q9ULG6 757 aa17.49■□□□□ 0.39
LIMS1-202ENST00000338045 OTOFQ9HC10 1997 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 A0A087WWV3 80 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PP2D1A8MPX8 630 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CYP3A4P08684 503 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 HOXA13P31271 388 aaPredicted RBP17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CIITAP33076 1130 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 UBA7P41226 1012 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 IREB2P48200 963 aaKnown RBP17.48■□□□□ 0.39
LIMS1-202ENST00000338045 DPCR1Q3MIW9 517 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 SAMD1Q6SPF0 538 aaPredicted RBP17.48■□□□□ 0.39
LIMS1-202ENST00000338045 TBC1D5Q92609 795 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 HAS1Q92839 578 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PAGE5Q96GU1 130 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PPP1R9BQ96SB3 815 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 DISC1Q9NRI5 854 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 RLFQ13129 1914 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CFBP00751 764 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PRR29P0C7W0 189 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 TECP42680 631 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 TXKP42681 527 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CCDC173Q0VFZ6 552 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PDIA5Q14554 519 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 IQCB1Q15051 598 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 ZRSR1Q15695 479 aaKnown RBP17.48■□□□□ 0.39
LIMS1-202ENST00000338045 LUZP1Q86V48 1076 aa17.48■□□□□ 0.39
LIMS1-202ENST00000338045 PNMA8AQ86V59 439 aaPredicted RBP17.48■□□□□ 0.39
LIMS1-202ENST00000338045 CLEC4DQ8WXI8 215 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms