RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 CALML4Q96GE6 196 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 ZDHHC15Q96MV8 337 aa16.68■□□□□ 0.26
CLCNKA-201ENST00000331433 SCN9AQ15858 1988 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 DDTLA6NHG4 134 aaPredicted RBP16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 CASQ1P31415 396 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 GRB10Q13322 594 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 ORC2Q13416 577 aaPredicted RBP16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 C2CD5Q86YS7 1000 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 C7orf25Q9BPX7 421 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 RIC8AQ9NPQ8 531 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 ABHD10Q9NUJ1 306 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 ERVK-24P63145 666 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 GJA10Q969M2 543 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 KIFC2Q96AC6 838 aa16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 DUSP9Q99956 384 aaKnown RBP16.67■□□□□ 0.26
CLCNKA-201ENST00000331433 GREB1LQ9C091 1923 aaPredicted RBP16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 ZBTB5O15062 677 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 GPATCH4Q5T3I0 446 aaKnown RBP16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 CSGALNACT2Q8N6G5 542 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 ZNF397Q8NF99 534 aaPredicted RBP16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 CCDC51Q96ER9 411 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 PNMA5Q96PV4 448 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 NUDT12Q9BQG2 462 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 THAP9Q9H5L6 903 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 BLOC1S4Q9NUP1 217 aa16.66■□□□□ 0.26
CLCNKA-201ENST00000331433 ECE2O60344 883 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 EEF1GP26641 437 aaKnown RBP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 FXR2P51116 673 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 MCM6Q14566 821 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 ZSCAN29Q8IWY8 852 aaPredicted RBP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 ACRBPQ8NEB7 543 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 CUL5Q93034 780 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 DHTKD1Q96HY7 919 aaPredicted RBP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 CARD6Q9BX69 1037 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 EHD4Q9H223 541 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 FAM198AQ9UFP1 575 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 LGALS16A8MUM7 142 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 HMGB2P26583 209 aaKnown RBP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 KRT9P35527 623 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 TMEM266Q2M3C6 531 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 DACT2Q5SW24 774 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 ANKRD40Q6AI12 368 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 PPP1R18Q6NYC8 613 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 SH3BP5LQ7L8J4 393 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 KIAA0895Q8NCT3 520 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 P2RX5Q93086 422 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 CCDC47Q96A33 483 aaKnown RBP16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 SIPA1L1O43166 1804 aa16.65■□□□□ 0.26
CLCNKA-201ENST00000331433 EEF2P13639 858 aaKnown RBP16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 FECHP22830 423 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 CLK2P49760 499 aaKnown RBP16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 AMPD3Q01432 767 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 SV2BQ7L1I2 683 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 MB21D1Q8N884 522 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 MNS1Q8NEH6 495 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 FLAD1Q8NFF5 587 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 CDK5RAP3Q96JB5 506 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 UIMC1Q96RL1 719 aa16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 MAGEC2Q9UBF1 373 aaPredicted RBP16.64■□□□□ 0.26
CLCNKA-201ENST00000331433 C10orf71Q711Q0 1435 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 MYH7BA7E2Y1 1941 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 SLX4Q8IY92 1834 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 MYMKA6NI61 221 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 PRKCSHP14314 528 aaPredicted RBP16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 CCNE1P24864 410 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 CHRNA5P30532 468 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 SEMA3FQ13275 785 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 TRIM14Q14142 442 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 STRIP1Q5VSL9 837 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 SNX29Q8TEQ0 813 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 CCDC17Q96LX7 622 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 PSTPIP2Q9H939 334 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 SLC39A2Q9NP94 309 aa16.64■□□□□ 0.25
CLCNKA-201ENST00000331433 TTC26A0AVF1 554 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 B4DLN1 442 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 CERKLQ49MI3 558 aaPredicted RBP16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 ARHGAP29Q52LW3 1261 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 DYMQ7RTS9 669 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 TMTC1Q8IUR5 882 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 ZNF507Q8TCN5 953 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 LARP4BQ92615 738 aaKnown RBP16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 MTMR8Q96EF0 704 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 DDX25Q9UHL0 483 aaKnown RBP16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L15C9J2P7 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L13C9JLJ4 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L11C9JVI0 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L18D6R9N7 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L22D6RA61 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L17D6RBQ6 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L19D6RCP7 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L20D6RJB6 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 H0YIN7 160 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 NKRFO15226 690 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 SLC1A4P43007 532 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 MRPL12P52815 198 aaKnown RBP16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L24Q0WX57 530 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 QRICH1Q2TAL8 776 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 USP17L6PQ6QN14 398 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 KCNK18Q7Z418 384 aa16.63■□□□□ 0.25
CLCNKA-201ENST00000331433 FBXO41Q8TF61 875 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms