RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CCDC195A0A1B0GUA6 201 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 TRAPPC10P48553 1259 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 PCYT1AP49585 367 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 SCNN1DP51172 638 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 NONOQ15233 471 aaKnown RBP eCLIP8.6□□□□□ -1.03
CIITA-201ENST00000324288 ORC6Q9Y5N6 252 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 ZNF532Q9HCE3 1301 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 NCKAP5LQ9HCH0 1330 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 ZBTB24O43167 697 aaPredicted RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 TADA3O75528 432 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 BFSP1Q12934 665 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 DPP8Q6V1X1 898 aaPredicted RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 CTNND1O60716 968 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 TOPBP1Q92547 1522 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 SYF2O95926 243 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 P4HA1P13674 534 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 GNGT2O14610 69 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 RPN1P04843 607 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 COPB1P53618 953 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 HSP90AA5PQ58FG0 334 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 LRRC47Q8N1G4 583 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 FGD4Q96M96 766 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 PARP2Q9UGN5 583 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 NOVA2Q9UNW9 492 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 IFT140Q96RY7 1462 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 ENO4A6NNW6 628 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 MOCS3O95396 460 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 S100BP04271 92 aaPredicted RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 MYSM1Q5VVJ2 828 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 PSPC1Q8WXF1 523 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 CDC23Q9UJX2 597 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 THRAP3Q9Y2W1 955 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 LBHD1Q9BQE6 289 aaPredicted RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 MYH11P35749 1972 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 PIK3CAP42336 1068 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 FBXO38Q6PIJ6 1188 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 GADL1Q6ZQY3 521 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 RFX6Q8HWS3 928 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 SPATA5Q8NB90 893 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 CDC26Q8NHZ8 85 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 MYO1EQ12965 1108 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 SF3B3Q15393 1217 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 GJC2Q5T442 439 aaPredicted RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 CACTINQ8WUQ7 758 aaKnown RBP8.6□□□□□ -1.03
CIITA-201ENST00000324288 AP1M1Q9BXS5 423 aa8.6□□□□□ -1.03
CIITA-201ENST00000324288 ALAS1P13196 640 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 NBPF14Q5TI25 921 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 CCDC51Q96ER9 411 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 PPP1R16BQ96T49 567 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 GOLGA8HP0CJ92 632 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 CDR2Q01850 454 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 SLC39A2Q9NP94 309 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 BTG4Q9NY30 223 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 PPARGC1AQ9UBK2 798 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 UBN2Q6ZU65 1347 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 VAMP4O75379 141 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 SKIP12755 728 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 HABP4Q5JVS0 413 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 ATL3Q6DD88 541 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 C11orf57Q6ZUT1 292 aaPredicted RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 EXT2Q93063 718 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ATG3Q9NT62 314 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 H3BRJ5 948 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 HEXIM1O94992 359 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 NCF2P19878 526 aaPredicted RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 DYNLT1P63172 113 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 TRIM59Q8IWR1 403 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.59□□□□□ -1.03
CIITA-201ENST00000324288 DISC1Q9NRI5 854 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 RNMTO43148 476 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 SULF1Q8IWU6 871 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 EDC3Q96F86 508 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 SMCO2A6NFE2 343 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 TMOD1P28289 359 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 SMYD4Q8IYR2 804 aaPredicted RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 BEGAINQ9BUH8 593 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 XRCC5P13010 732 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 SMAD1Q15797 465 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 CAPN11Q9UMQ6 739 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ZRANB2O95218 330 aaKnown RBP eCLIP8.59□□□□□ -1.03
CIITA-201ENST00000324288 PMS1P54277 932 aaKnown RBP8.59□□□□□ -1.03
CIITA-201ENST00000324288 PDCLQ13371 301 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ME3Q16798 604 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ARMC9Q7Z3E5 817 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 SFMBT1Q9UHJ3 866 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ACSL3O95573 720 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 LIG4P49917 911 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 MMS22LQ6ZRQ5 1243 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 SPZ1Q9BXG8 430 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 ZNF148Q9UQR1 794 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 LZTS1Q9Y250 596 aa8.59□□□□□ -1.03
CIITA-201ENST00000324288 RAPH1Q70E73 1250 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 KRT25Q7Z3Z0 450 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 C1orf112Q9NSG2 853 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 NPATQ14207 1427 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 DNAJC13O75165 2243 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 ARID5BQ14865 1188 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 TMEM87BQ96K49 555 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 PARD6BQ9BYG5 372 aa8.58□□□□□ -1.04
CIITA-201ENST00000324288 PALD1Q9ULE6 856 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms