RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 K7ENM7 598 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 YWHAGP61981 247 aaKnown RBP eCLIP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 CUL1Q13616 776 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 NBPF9Q3BBW0 867 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MTBPQ96DY7 904 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 CHMP6Q96FZ7 201 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 TMEM191BP0C7N4 346 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ITGA6P23229 1130 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 LONP1P36776 959 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MSH2P43246 934 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 NOSTRINQ8IVI9 506 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 NFATC2IPQ8NCF5 419 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MMS19Q96T76 1030 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 PCDHA12Q9UN75 941 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 PAMP19021 973 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 GFM2Q969S9 779 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 XPO4Q9C0E2 1151 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MYO1FO00160 1098 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 TMCC1O94876 653 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 KRT8P05787 483 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ATP6V1E2Q96A05 226 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ZNF274Q96GC6 653 aaPredicted RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 AK8Q96MA6 479 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 TRIM45Q9H8W5 580 aaPredicted RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MRPL11Q9Y3B7 192 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ZNF189O75820 626 aaPredicted RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 USH1GQ495M9 461 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ELMSAN1Q6PJG2 1045 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 ZNF713Q8N859 430 aaPredicted RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 PBKQ96KB5 322 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 CDV3Q9UKY7 258 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 PPP2R2CQ9Y2T4 447 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 GRIN2AQ12879 1464 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 PLB1Q6P1J6 1458 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MCF2P10911 925 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 DDX5P17844 614 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 FAM102BQ5T8I3 360 aa16.8■□□□□ 0.28
HCFC1-201ENST00000310441 CACTINQ8WUQ7 758 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 MRPL47Q9HD33 250 aaKnown RBP16.8■□□□□ 0.28
HCFC1-201ENST00000310441 NOP14P78316 857 aaKnown RBP16.79■□□□□ 0.28
HCFC1-201ENST00000310441 ALDH1B1P30837 517 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 MFAP3P55082 362 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 LRRC8AQ8IWT6 810 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 SMCR8Q8TEV9 937 aaPredicted RBP16.79■□□□□ 0.28
HCFC1-201ENST00000310441 TOM1O60784 492 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 CYP2J2P51589 502 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 DDX25Q9UHL0 483 aaKnown RBP16.79■□□□□ 0.28
HCFC1-201ENST00000310441 UGGT2Q9NYU1 1516 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 TLR3O15455 904 aaKnown RBP16.79■□□□□ 0.28
HCFC1-201ENST00000310441 PCYT1AP49585 367 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 OCA2Q04671 838 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 NR1H3Q13133 447 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 TEDDM1Q5T9Z0 273 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 ADGRF5Q8IZF2 1346 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 RCN2Q14257 317 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 TRAIPQ9BWF2 469 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 FAM135BQ49AJ0 1406 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 SCYL2Q6P3W7 929 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 ZMYM6O95789 1325 aa16.79■□□□□ 0.28
HCFC1-201ENST00000310441 DCAF15Q66K64 600 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 C16orf87Q6PH81 154 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 SMYD2Q9NRG4 433 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 TLK1Q9UKI8 766 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 KDRP35968 1356 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 C4orf50Q6ZRC1 276 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 WDR17Q8IZU2 1322 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 SGSM2O43147 1006 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 ZNF500O60304 480 aaPredicted RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 KRT4P19013 534 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 POLE3Q9NRF9 147 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 MAPK13O15264 365 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 GTPBP6O43824 516 aaPredicted RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 GAP43P17677 238 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 SERPINB10P48595 397 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 TMED1Q13445 227 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 SPDYE1Q8NFV5 336 aaPredicted RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 AATFQ9NY61 560 aaKnown RBP eCLIP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 DDX39AO00148 427 aaKnown RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 TTBK2Q6IQ55 1244 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 NEK8Q86SG6 692 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 ANKRD36BP1Q96IX9 119 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 POLGP54098 1239 aaPredicted RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 EXOC3L4Q17RC7 722 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 GRAMD4Q6IC98 578 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 KRT82Q9NSB4 513 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 CPSF3Q9UKF6 684 aaKnown RBP16.78■□□□□ 0.28
HCFC1-201ENST00000310441 IL1RL1Q01638 556 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 NUDCD1Q96RS6 583 aa16.78■□□□□ 0.28
HCFC1-201ENST00000310441 HDAC4P56524 1084 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 SPATA5Q8NB90 893 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 XAGE2Q96GT9 111 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 DNMT1P26358 1616 aaKnown RBP16.77■□□□□ 0.28
HCFC1-201ENST00000310441 PGRMC1O00264 195 aaKnown RBP16.77■□□□□ 0.28
HCFC1-201ENST00000310441 IFT88Q13099 833 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 JARID2Q92833 1246 aaPredicted RBP16.77■□□□□ 0.28
HCFC1-201ENST00000310441 NDE1Q9NXR1 346 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 NEUROG2Q9H2A3 272 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 YY1AP1Q9H869 796 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 PSTPIP2Q9H939 334 aa16.77■□□□□ 0.28
HCFC1-201ENST00000310441 ABCC12Q96J65 1359 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms