RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NDUFA10O95299 355 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 MOCS3O95396 460 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 BFSP1Q12934 665 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 RESTQ13127 1097 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 RBM26Q5T8P6 1007 aaKnown RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 SMYD4Q8IYR2 804 aaPredicted RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 PBKQ96KB5 322 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 SAMSN1Q9NSI8 373 aaKnown RBP18.93■□□□□ 0.62
SYNPO-201ENST00000307662 ZNF148Q9UQR1 794 aa18.93■□□□□ 0.62
SYNPO-201ENST00000307662 FMNL1O95466 1100 aaPredicted RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CYP21A2P08686 494 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 GYS2P54840 703 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 TRIM6Q9C030 488 aaPredicted RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 RWDD2AQ9UIY3 292 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 AFG3L2Q9Y4W6 797 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 MAST3O60307 1309 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 TRAPPC10P48553 1259 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 PLTPP55058 493 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 TCIRG1Q13488 830 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 SLFN12Q8IYM2 578 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CNBD1Q8NA66 436 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 TGFBRAP1Q8WUH2 860 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CCDC87Q9NVE4 849 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 KCNG1Q9UIX4 513 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 KCNQ3O43525 872 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 LMNB2Q03252 620 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 EMBQ6PCB8 327 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 NHEJ1Q9H9Q4 299 aaPredicted RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 NOVA2Q9UNW9 492 aaKnown RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CD2APQ9Y5K6 639 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 SLFN14P0C7P3 912 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CXCR5P32302 372 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CC2D1AQ6P1N0 951 aaPredicted RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 PROCA1Q8NCQ7 364 aaPredicted RBP18.92■□□□□ 0.62
SYNPO-201ENST00000307662 NLRP7Q8WX94 980 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 CFBP00751 764 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 KRT19P08727 400 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 SKIP12755 728 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 KRT81Q14533 505 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 TFCP2L1Q9NZI6 479 aa18.92■□□□□ 0.62
SYNPO-201ENST00000307662 MYOM2P54296 1465 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 LAD1O00515 517 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 GAS7O60861 476 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 STAM2O75886 525 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 GPKOWQ92917 476 aaPredicted RBP eCLIP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 PARP3Q9Y6F1 533 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 MAN2A1Q16706 1144 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 PDCD7Q8N8D1 485 aaKnown RBP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 CCHCR1Q8TD31 782 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 HAUS1Q96CS2 278 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 EEF2KMTQ96G04 330 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 C1orf112Q9NSG2 853 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 COL4A3BPQ9Y5P4 624 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 EIF3CLB5ME19 914 aaKnown RBP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 SPECC1L-ADORA2AF8WAN1 911 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 MGEA5O60502 916 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 ZBED6P86452 979 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 EIF3CQ99613 913 aaKnown RBP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 TUBB6Q9BUF5 446 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 EIF3BP55884 814 aaKnown RBP18.91■□□□□ 0.62
SYNPO-201ENST00000307662 ZMYM1Q5SVZ6 1142 aa18.91■□□□□ 0.62
SYNPO-201ENST00000307662 KDM6BO15054 1643 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 PNMA1Q8ND90 353 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 RCN2Q14257 317 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 GRAMD1CQ8IYS0 662 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 MESDQ14696 234 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 PRR16Q569H4 304 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 DDX25Q9UHL0 483 aaKnown RBP18.9■□□□□ 0.62
SYNPO-201ENST00000307662 TRPC6Q9Y210 931 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 PRPF6O94906 941 aaKnown RBP18.9■□□□□ 0.62
SYNPO-201ENST00000307662 POLE2P56282 527 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 ARID5BQ14865 1188 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 APOA5Q6Q788 366 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 TMTC3Q6ZXV5 915 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 TRIM42Q8IWZ5 723 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 GGA1Q9UJY5 639 aa18.9■□□□□ 0.62
SYNPO-201ENST00000307662 ABCC12Q96J65 1359 aa18.89■□□□□ 0.62
SYNPO-201ENST00000307662 LARGE1O95461 756 aa18.89■□□□□ 0.62
SYNPO-201ENST00000307662 FTCDO95954 541 aa18.89■□□□□ 0.62
SYNPO-201ENST00000307662 MAP3K7O43318 606 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 INHBAP08476 426 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 PHKG2P15735 406 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 LTKP29376 864 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 SLMAPQ14BN4 828 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 CHUKO15111 745 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ZNF589Q86UQ0 364 aaPredicted RBP18.89■□□□□ 0.61
SYNPO-201ENST00000307662 PPM1KQ8N3J5 372 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 PDLIM2Q96JY6 352 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 RNF26Q9BY78 433 aaPredicted RBP18.89■□□□□ 0.61
SYNPO-201ENST00000307662 PSTPIP2Q9H939 334 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 NOP53Q9NZM5 478 aaKnown RBP18.89■□□□□ 0.61
SYNPO-201ENST00000307662 MYO5CQ9NQX4 1742 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ANKRD20A4Q4UJ75 823 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ANKRD20A8PQ5CZ79 823 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ANKRD20A2Q5SQ80 823 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 ANKRD20A1Q5TYW2 823 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 FAM178BQ8IXR5 827 aa18.89■□□□□ 0.61
SYNPO-201ENST00000307662 NEK9Q8TD19 979 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms