RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 hCG_1642624A0A1W2PR95 340 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 SMIM22K7EJ46 135 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 MAP2K7O14733 419 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 MARCH6O60337 910 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 HSF2BPO75031 334 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 LIFRP42702 1097 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 ACTN3Q08043 901 aaPredicted RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 PNOCQ13519 176 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 E2F5Q15329 346 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 CCDC181Q5TID7 509 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 LRRC47Q8N1G4 583 aaKnown RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 TRIM6Q9C030 488 aaPredicted RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 PCDHAC2Q9Y5I4 1007 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 PARP1P09874 1014 aaKnown RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 PFKFB1P16118 471 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 KCNA3P22001 575 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 ANTXR2P58335 489 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 ZYXQ15942 572 aaKnown RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 ILDR2Q71H61 639 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 GPCPD1Q9NPB8 672 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 V9GY48 417 aaPredicted RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 TNRC6CQ9HCJ0 1690 aaKnown RBP12.14□□□□□ -0.47
LSM3-201ENST00000306024 GOLGA6L10A6NI86 522 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 SOWAHDA6NJG2 315 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 RPSAP08865 295 aaKnown RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 NLRP5P59047 1200 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 PPARDQ03181 441 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 PPFIA1Q13136 1202 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 AP1ARQ63HQ0 302 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 APOBEC3HQ6NTF7 200 aaKnown RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 SND1Q7KZF4 910 aaKnown RBP eCLIP12.13□□□□□ -0.47
LSM3-201ENST00000306024 FOXP4Q8IVH2 680 aaPredicted RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 FMR1NBQ8N0W7 255 aaPredicted RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 HNRNPLLQ8WVV9 542 aaKnown RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 CCDC17Q96LX7 622 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 JADE2Q9NQC1 790 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 CPSF2Q9P2I0 782 aaKnown RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 ATP1A2P50993 1020 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 ABCB5Q2M3G0 1257 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 ENAHQ8N8S7 591 aaPredicted RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 MYOZ2Q9NPC6 264 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 ZNF70Q9UC06 446 aaPredicted RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 ZMYM6O95789 1325 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 NFKBIEO00221 500 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 ORC4O43929 436 aa12.13□□□□□ -0.47
LSM3-201ENST00000306024 RSRC1Q96IZ7 334 aaKnown RBP12.13□□□□□ -0.47
LSM3-201ENST00000306024 GAKO14976 1311 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 PPP1R12AO14974 1030 aaPredicted RBP12.12□□□□□ -0.47
LSM3-201ENST00000306024 RPS6KA5O75582 802 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 VIL1P09327 827 aaKnown RBP12.12□□□□□ -0.47
LSM3-201ENST00000306024 RHBDL3P58872 404 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 CKAP4Q07065 602 aaKnown RBP12.12□□□□□ -0.47
LSM3-201ENST00000306024 COL9A3Q14050 684 aaPredicted RBP12.12□□□□□ -0.47
LSM3-201ENST00000306024 C9orf131Q5VYM1 1079 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 LY9Q9HBG7 655 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 MYO6Q9UM54 1294 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 CLIC4Q9Y696 253 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 MYO1FO00160 1098 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 STX17P56962 302 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 ICA1Q05084 483 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 MTF1Q14872 753 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 ODF2Q5BJF6 829 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 NCAPH2Q6IBW4 605 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 SULF1Q8IWU6 871 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 SPDYE2BA6NHP3 402 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 FOXP2O15409 715 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 SPDYE6P0CI01 402 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 GOLGA8HP0CJ92 632 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 RPS12P25398 132 aaKnown RBP12.12□□□□□ -0.47
LSM3-201ENST00000306024 GGCXP38435 758 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 PTGER2P43116 358 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 HEATR3Q7Z4Q2 680 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 RASSF8Q8NHQ8 419 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 UBXN6Q9BZV1 441 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 CD248Q9HCU0 757 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 ANAPC4Q9UJX5 808 aa12.12□□□□□ -0.47
LSM3-201ENST00000306024 A0A1W2PQ27 194 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 A0A1W2PQ64 194 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 A0A1W2PQD8 194 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 NAP1L1P55209 391 aaKnown RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 FKBP1AP62942 108 aaKnown RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 NSUN7Q8NE18 718 aaKnown RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 DCPSQ96C86 337 aaKnown RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 SENP2Q9HC62 589 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 ARHGEF10LQ9HCE6 1279 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 DDX4Q9NQI0 724 aaKnown RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 WDR19Q8NEZ3 1342 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 SLC1A4P43007 532 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 RASA3Q14644 834 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 PPP2R5BQ15173 497 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 NBPF9Q3BBW0 867 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 ANO1Q5XXA6 986 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 BPIFA3Q9BQP9 254 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 ANKZF1Q9H8Y5 726 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 LRRIQ3A6PVS8 624 aaPredicted RBP12.11□□□□□ -0.47
LSM3-201ENST00000306024 IGDCC4Q8TDY8 1250 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 ZNF408Q9H9D4 720 aa12.11□□□□□ -0.47
LSM3-201ENST00000306024 N4BP3O15049 544 aa12.1□□□□□ -0.47
LSM3-201ENST00000306024 GRIN3BO60391 1043 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms