RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 EEF2KMTQ96G04 330 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 EIF3CQ99613 913 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 ADORA1P30542 326 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CXCR5P32302 372 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 PDE6CP51160 858 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 E2F4Q16254 413 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CTAGE3PQ8IX95 158 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CNBD1Q8NA66 436 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CCT6BQ92526 530 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 MAGOHBQ96A72 148 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 TRIM4Q9C037 500 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 ATP8A1Q9Y2Q0 1164 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 OPHN1O60890 802 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 PDE8BO95263 885 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 SESN3P58005 492 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 DHX9Q08211 1270 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 KRT31Q15323 416 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 USH1GQ495M9 461 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 PPP4R1Q8TF05 950 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 KLHL29Q96CT2 875 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 ATG3Q9NT62 314 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 USP27XA6NNY8 438 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 IFNB1P01574 187 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CCNE1P24864 410 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 ADD2P35612 726 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 EIF4A3P38919 411 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 SLC8A3P57103 927 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 FMR1NBQ8N0W7 255 aaPredicted RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 DDX39AO00148 427 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 VPS41P49754 854 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 NR5A1Q13285 461 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 MB21D1Q8N884 522 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 CFAP61Q8NHU2 1237 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 GOLPH3LQ9H4A5 285 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 SMIM24O75264 130 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 CRCPO75575 148 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 BAG2O95816 211 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 GUCY2CP25092 1073 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 BCAMP50895 628 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 CUL1Q13616 776 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 RASIP1Q5U651 963 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 TTC16Q8NEE8 873 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 GAS7O60861 476 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 SASH1O94885 1247 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 LIFRP42702 1097 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 ARHGEF18Q6ZSZ5 1173 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 VTI1AQ96AJ9 217 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 HSPA6P17066 643 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 FKBP3Q00688 224 aaKnown RBP14.03□□□□□ -0.16
COL3A1-201ENST00000304636 NAA30Q147X3 362 aaPredicted RBP14.03□□□□□ -0.16
COL3A1-201ENST00000304636 PSMD6Q15008 389 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 CDAN1Q8IWY9 1227 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 OSBP2Q969R2 916 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 PHF23Q9BUL5 403 aaPredicted RBP14.03□□□□□ -0.16
COL3A1-201ENST00000304636 PUS3Q9BZE2 481 aaKnown RBP14.03□□□□□ -0.16
COL3A1-201ENST00000304636 PCDHB6Q9Y5E3 794 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 SERPING1P05155 500 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 PHKA1P46020 1223 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 KIF11P52732 1056 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 CASC4Q6P4E1 433 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 TBC1D22AQ8WUA7 517 aa14.03□□□□□ -0.16
COL3A1-201ENST00000304636 CDCA7Q9BWT1 371 aaPredicted RBP14.03□□□□□ -0.16
COL3A1-201ENST00000304636 LMNB2Q03252 620 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 DHX40Q8IX18 779 aaKnown RBP14.02□□□□□ -0.16
COL3A1-201ENST00000304636 ANKRD35Q8N283 1001 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 NOVA2Q9UNW9 492 aaKnown RBP14.02□□□□□ -0.16
COL3A1-201ENST00000304636 FTCDO95954 541 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 CFBP00751 764 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 PLTPP55058 493 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 MRPS9P82933 396 aaKnown RBP14.02□□□□□ -0.16
COL3A1-201ENST00000304636 N4BP2L2Q92802 583 aaPredicted RBP14.02□□□□□ -0.16
COL3A1-201ENST00000304636 STK17AQ9UEE5 414 aa14.02□□□□□ -0.16
COL3A1-201ENST00000304636 ANO9A1A5B4 782 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 SLMAPQ14BN4 828 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 PRR16Q569H4 304 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 BCORL1Q5H9F3 1711 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 GNPATO15228 680 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 PRPF3O43395 683 aaKnown RBP14.02□□□□□ -0.17
COL3A1-201ENST00000304636 AFPP02771 609 aaKnown RBP14.02□□□□□ -0.17
COL3A1-201ENST00000304636 TNNI1P19237 187 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 FAM178BQ8IXR5 827 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 GBP7Q8N8V2 638 aaPredicted RBP14.02□□□□□ -0.17
COL3A1-201ENST00000304636 ORAI2Q96SN7 254 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 TXLNGQ9NUQ3 528 aa14.02□□□□□ -0.17
COL3A1-201ENST00000304636 CD19P15391 556 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 YWHAEP62258 255 aaKnown RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 SLC7A5Q01650 507 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 PTPN12Q05209 780 aaKnown RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 ALDH8A1Q9H2A2 487 aaPredicted RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 DAPK3O43293 454 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 NR2F2P24468 414 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 HIBCHQ6NVY1 386 aaPredicted RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 ZNF579Q8NAF0 562 aaKnown RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 CCHCR1Q8TD31 782 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 ABHD10Q9NUJ1 306 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 TRAPPC3LQ5T215 181 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.01□□□□□ -0.17
COL3A1-201ENST00000304636 NEK9Q8TD19 979 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 EPSTI1Q96J88 318 aa14.01□□□□□ -0.17
COL3A1-201ENST00000304636 TPX2Q9ULW0 747 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms