RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 A0A1W2PQJ5 194 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 CORO7P57737 925 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 PPP2R5CQ13362 524 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 VSIG1Q86XK7 387 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 CCDC138Q96M89 665 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 BHMT2Q9H2M3 363 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 CAPN15O75808 1086 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 DHX9Q08211 1270 aaKnown RBP5.71□□□□□ -1.49
SCN1A-201ENST00000303395 BYSLQ13895 437 aaKnown RBP5.71□□□□□ -1.49
SCN1A-201ENST00000303395 EP400NLQ6ZTU2 488 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 DHX38Q92620 1227 aaKnown RBP5.71□□□□□ -1.49
SCN1A-201ENST00000303395 EPC1Q9H2F5 836 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 MKNK2Q9HBH9 465 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 LRP2BPQ9P2M1 347 aa5.71□□□□□ -1.49
SCN1A-201ENST00000303395 SMG5Q9UPR3 1016 aaKnown RBP5.71□□□□□ -1.49
SCN1A-201ENST00000303395 FOSP01100 380 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 HARSP12081 509 aaKnown RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TTKP33981 857 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 INF2Q27J81 1249 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 IRAK4Q9NWZ3 460 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 EPS15L1Q9UBC2 864 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 AMOTL2Q9Y2J4 779 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 NFAT5O94916 1531 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 FAM177BA6PVY3 158 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SERPINI2O75830 405 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 RPL22P35268 128 aaKnown RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 DNA2P51530 1060 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TCERG1LQ5VWI1 586 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SETD3Q86TU7 594 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 NEK9Q8TD19 979 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SDCCAG3Q96C92 435 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 EPN1Q9Y6I3 576 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 RASSF10A6NK89 507 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 E7EVH7 732 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 ELL2O00472 640 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 CPP00450 1065 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TBC1D8BQ0IIM8 1120 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 KCNB1Q14721 858 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 ALX1Q15699 326 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 CAMK4Q16566 473 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SFMBT2Q5VUG0 894 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 NYAP1Q6ZVC0 841 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TRPC4APQ8TEL6 797 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 MAP3K14Q99558 947 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 KAT14Q9H8E8 782 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SFMBT1Q9UHJ3 866 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 COPG1Q9Y678 874 aaKnown RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 FAM95CA0A1B0GW59 222 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 KRT9P35527 623 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 KIFC2Q96AC6 838 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 AATFQ9NY61 560 aaKnown RBP eCLIP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 ADCY9O60503 1353 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 POLR3DP05423 398 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-201ENST00000303395 CLCN6P51797 869 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 XIAPP98170 497 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TMTC4Q5T4D3 741 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 TSPYL6Q8N831 410 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 SNRKQ9NRH2 765 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 ANKIB1Q9P2G1 1089 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 AMFRQ9UKV5 643 aa5.71□□□□□ -1.5
SCN1A-201ENST00000303395 MEFVO15553 781 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SNAPC5O75971 98 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 HLA-DOAP06340 250 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 H2AFXP16104 143 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 IFNAR1P17181 557 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SMTNP53814 917 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 FKBP4Q02790 459 aaKnown RBP eCLIP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 RASSF7Q02833 373 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SFSWAPQ12872 951 aaKnown RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 TMEM132EQ6IEE7 984 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PRR23CQ6ZRP0 262 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SLC27A2O14975 620 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 AARSP49588 968 aaKnown RBP eCLIP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 RASA3Q14644 834 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CNBD1Q8NA66 436 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 TRAIPQ9BWF2 469 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PRDM16Q9HAZ2 1276 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 GOLGA8CPA6NN73 597 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PSMD14O00487 310 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 HMOX1P09601 288 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 MAGEA1P43355 309 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 RAPGEF1Q13905 1077 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CCDC92Q53HC0 331 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PPP4R4Q6NUP7 873 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 FAM89AQ96GI7 184 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 DIABLOQ9NR28 239 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PAIP2BQ9ULR5 123 aaKnown RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 SUFUQ9UMX1 484 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ATP6V0A2Q9Y487 856 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ORC6Q9Y5N6 252 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 NINQ8N4C6 2090 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CTNNA1P35221 906 aaKnown RBP5.7□□□□□ -1.5
SCN1A-201ENST00000303395 PHEXP78562 749 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 POLA2Q14181 598 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ITIH4Q14624 930 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 CASP8Q14790 479 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 ATP2B3Q16720 1220 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 FERMT3Q86UX7 667 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 LRRC43Q8N309 656 aa5.7□□□□□ -1.5
SCN1A-201ENST00000303395 TRIM15Q9C019 465 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms