RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 NAP1L4Q99733 375 aaKnown RBP17.6■□□□□ 0.41
LSM6-201ENST00000296581 ANO3Q9BYT9 981 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 PIK3CDO00329 1044 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 FOXN1O15353 648 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 TDP2O95551 362 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 GCFC2P16383 781 aaKnown RBP17.6■□□□□ 0.41
LSM6-201ENST00000296581 DPY19L2Q6NUT2 758 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 POTEDQ86YR6 584 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 AK8Q96MA6 479 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 PICK1Q9NRD5 415 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 EMILIN3Q9NT22 766 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 ZC3H4Q9UPT8 1303 aaKnown RBP17.6■□□□□ 0.41
LSM6-201ENST00000296581 PAPPA2Q9BXP8 1791 aa17.6■□□□□ 0.41
LSM6-201ENST00000296581 A0A087WWV3 80 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 FOSP01100 380 aaPredicted RBP17.59■□□□□ 0.41
LSM6-201ENST00000296581 MTMR2Q13614 643 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 IQCB1Q15051 598 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 NT5DC1Q5TFE4 455 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 LUZP1Q86V48 1076 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 CEP57L1Q8IYX8 460 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 CRYGNQ8WXF5 182 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 CCDC34Q96HJ3 373 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 P2RX7Q99572 595 aaKnown RBP17.59■□□□□ 0.41
LSM6-201ENST00000296581 CCSER1Q9C0I3 900 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 PARP14Q460N5 1801 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 SLC37A4O43826 429 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 TXLNAP40222 546 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 USP11P51784 963 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 SPP2Q13103 211 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 ZRSR1Q15695 479 aaKnown RBP17.59■□□□□ 0.41
LSM6-201ENST00000296581 IQUBQ8NA54 791 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 ZNF280CQ8ND82 737 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 IPO4Q8TEX9 1081 aaKnown RBP17.59■□□□□ 0.41
LSM6-201ENST00000296581 DCPSQ96C86 337 aaKnown RBP17.59■□□□□ 0.41
LSM6-201ENST00000296581 SLF1Q9BQI6 1058 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 FZD1Q9UP38 647 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 PCDHA5Q9Y5H7 936 aa17.59■□□□□ 0.41
LSM6-201ENST00000296581 TAL1P17542 331 aaPredicted RBP17.58■□□□□ 0.4
LSM6-201ENST00000296581 VCAM1P19320 739 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 SARSP49591 514 aaKnown RBP17.58■□□□□ 0.4
LSM6-201ENST00000296581 BACE1P56817 501 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 CALCRLQ16602 461 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 DPCR1Q3MIW9 517 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 CCDC174Q6PII3 467 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 MOXD1Q6UVY6 613 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 PRPF38AQ8NAV1 312 aaKnown RBP17.58■□□□□ 0.4
LSM6-201ENST00000296581 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.58■□□□□ 0.42e-6■■■□□ 15.6
LSM6-201ENST00000296581 MBOAT7Q96N66 472 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 ABCB11O95342 1321 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 PRR29P0C7W0 189 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 SPATA20Q8TB22 786 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 C12orf42Q96LP6 360 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 BPIFA3Q9BQP9 254 aa17.58■□□□□ 0.4
LSM6-201ENST00000296581 NAT10Q9H0A0 1025 aaKnown RBP17.58■□□□□ 0.4
LSM6-201ENST00000296581 CYP3A7-CYP3A51PA0A087WV96 503 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 BIN1O00499 593 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 USP2O75604 605 aaPredicted RBP17.57■□□□□ 0.4
LSM6-201ENST00000296581 CYP3A7P24462 503 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 FXR2P51116 673 aaKnown RBP eCLIP17.57■□□□□ 0.4
LSM6-201ENST00000296581 DGKZQ13574 1117 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 PDXDC2PQ6P474 469 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 USP50Q70EL3 339 aaPredicted RBP17.57■□□□□ 0.4
LSM6-201ENST00000296581 ZSCAN30Q86W11 494 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 SULF1Q8IWU6 871 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 IGSF22Q8N9C0 903 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 PAGE5Q96GU1 130 aa17.57■□□□□ 0.4
LSM6-201ENST00000296581 DDX25Q9UHL0 483 aaKnown RBP17.57■□□□□ 0.4
LSM6-201ENST00000296581 MRPL11Q9Y3B7 192 aaKnown RBP17.57■□□□□ 0.4
LSM6-201ENST00000296581 ZNF536O15090 1300 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 UTRNP46939 3433 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 GPR162Q16538 588 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 LDHDQ86WU2 507 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 GRAMD1CQ8IYS0 662 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 DISC1Q9NRI5 854 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 SPDYE3A6NKU9 549 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 PP2D1A8MPX8 630 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 C19orf81C9J6K1 198 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 ICAM1P05362 532 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 CDC25AP30304 524 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 SREBF1P36956 1147 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 UBA7P41226 1012 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 ZHX2Q9Y6X8 837 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 SCN4AP35499 1836 aa17.56■□□□□ 0.4
LSM6-201ENST00000296581 OTOFQ9HC10 1997 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 ADM5C9JUS6 153 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 ARHGAP4P98171 946 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 KARSQ15046 597 aaKnown RBP17.55■□□□□ 0.4
LSM6-201ENST00000296581 TRIML1Q8N9V2 468 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 ZC3H15Q8WU90 426 aaKnown RBP17.55■□□□□ 0.4
LSM6-201ENST00000296581 SMARCE1Q969G3 411 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 RPAP3Q9H6T3 665 aaPredicted RBP17.55■□□□□ 0.4
LSM6-201ENST00000296581 PPP1R9AQ9ULJ8 1098 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 RLFQ13129 1914 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 GRIN3BO60391 1043 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 TECP42680 631 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 TXKP42681 527 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 DHX40Q8IX18 779 aaKnown RBP17.55■□□□□ 0.4
LSM6-201ENST00000296581 HAS1Q92839 578 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 TANGO6Q9C0B7 1094 aa17.55■□□□□ 0.4
LSM6-201ENST00000296581 SLC38A10Q9HBR0 1119 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms