RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ZNF219Q9P2Y4 722 aaPredicted RBP26.9■■□□□ 1.9
TRIM54-201ENST00000296098 PI4KBQ9UBF8 816 aa26.9■■□□□ 1.9
TRIM54-201ENST00000296098 FAM196BA6NMK8 535 aa26.89■■□□□ 1.9
TRIM54-201ENST00000296098 IRF2BP1Q8IU81 584 aa26.89■■□□□ 1.9
TRIM54-201ENST00000296098 CREBRFQ8IUR6 639 aa26.89■■□□□ 1.9
TRIM54-201ENST00000296098 DHTKD1Q96HY7 919 aaPredicted RBP26.89■■□□□ 1.9
TRIM54-201ENST00000296098 CCDC94Q9BW85 323 aaPredicted RBP26.89■■□□□ 1.9
TRIM54-201ENST00000296098 TRIM34Q9BYJ4 488 aa26.89■■□□□ 1.9
TRIM54-201ENST00000296098 STK17AQ9UEE5 414 aa26.89■■□□□ 1.9
TRIM54-201ENST00000296098 EDIL3O43854 480 aa26.89■■□□□ 1.89
TRIM54-201ENST00000296098 EEF1GP26641 437 aaKnown RBP26.89■■□□□ 1.89
TRIM54-201ENST00000296098 MRPL12P52815 198 aaKnown RBP26.89■■□□□ 1.89
TRIM54-201ENST00000296098 PDE4DQ08499 809 aa26.89■■□□□ 1.89
TRIM54-201ENST00000296098 CERKLQ49MI3 558 aaPredicted RBP26.89■■□□□ 1.89
TRIM54-201ENST00000296098 ZSCAN29Q8IWY8 852 aaPredicted RBP26.89■■□□□ 1.89
TRIM54-201ENST00000296098 DESI2Q9BSY9 194 aa26.89■■□□□ 1.89
TRIM54-201ENST00000296098 SERPINA10Q9UK55 444 aa26.89■■□□□ 1.89
TRIM54-201ENST00000296098 ARFGEF1Q9Y6D6 1849 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 NPM3O75607 178 aaKnown RBP26.88■■□□□ 1.89
TRIM54-201ENST00000296098 CCDC175P0C221 793 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 FXR1P51114 621 aaKnown RBP eCLIP26.88■■□□□ 1.89
TRIM54-201ENST00000296098 GRB10Q13322 594 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 MTF1Q14872 753 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 PPP4R3AQ6IN85 833 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 NOC3LQ8WTT2 800 aaKnown RBP26.88■■□□□ 1.89
TRIM54-201ENST00000296098 DCAF4Q8WV16 495 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 ARID3AQ99856 593 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 NYAP2Q9P242 653 aa26.88■■□□□ 1.89
TRIM54-201ENST00000296098 CGNQ9P2M7 1197 aaKnown RBP26.88■■□□□ 1.89
TRIM54-201ENST00000296098 EEF2P13639 858 aaKnown RBP26.87■■□□□ 1.89
TRIM54-201ENST00000296098 PPP1R2P41236 205 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 TTI2Q6NXR4 508 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 CNKSR1Q969H4 720 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 CDK5RAP3Q96JB5 506 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 KANSL2Q9H9L4 492 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 FECHP22830 423 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 CHRNA5P30532 468 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 SH3BP5LQ7L8J4 393 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 MKL1Q969V6 931 aa26.87■■□□□ 1.89
TRIM54-201ENST00000296098 UBXN1Q04323 297 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 PDIA5Q14554 519 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 RAD9BQ6WBX8 426 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 SV2BQ7L1I2 683 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 PSTPIP2Q9H939 334 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 MAGEC2Q9UBF1 373 aaPredicted RBP26.86■■□□□ 1.89
TRIM54-201ENST00000296098 MYH7BA7E2Y1 1941 aa26.86■■□□□ 1.89
TRIM54-201ENST00000296098 BICDL2A1A5D9 508 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 LGALS16A8MUM7 142 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 FANCGO15287 622 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 RAD21O60216 631 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 AOC3Q16853 763 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 PNMA5Q96PV4 448 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 SRRTQ9BXP5 876 aaKnown RBP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 NOL12Q9UGY1 213 aaKnown RBP eCLIP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 DDX25Q9UHL0 483 aaKnown RBP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 V9GYY5 206 aaPredicted RBP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 POTEMA6NI47 508 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 SLC1A4P43007 532 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 SHROOM1Q2M3G4 852 aaPredicted RBP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 TATDN1Q6P1N9 297 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 CNNM4Q6P4Q7 775 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 P2RX5Q93086 422 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 NUP88Q99567 741 aaPredicted RBP26.85■■□□□ 1.89
TRIM54-201ENST00000296098 BLOC1S4Q9NUP1 217 aa26.85■■□□□ 1.89
TRIM54-201ENST00000296098 GCFC2P16383 781 aaKnown RBP26.84■■□□□ 1.89
TRIM54-201ENST00000296098 CCNE1P24864 410 aa26.84■■□□□ 1.89
TRIM54-201ENST00000296098 GNG11P61952 73 aa26.84■■□□□ 1.89
TRIM54-201ENST00000296098 SLFN13Q68D06 897 aa26.84■■□□□ 1.89
TRIM54-201ENST00000296098 GLT8D2Q9H1C3 349 aa26.84■■□□□ 1.89
TRIM54-201ENST00000296098 ABHD10Q9NUJ1 306 aa26.84■■□□□ 1.89
TRIM54-201ENST00000296098 ICA1Q05084 483 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 STK4Q13043 487 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 ELF2Q15723 593 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 QRICH1Q2TAL8 776 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 COBLL1Q53SF7 1204 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 KRT79Q5XKE5 535 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 TMEM179Q6ZVK1 233 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 CSGALNACT2Q8N6G5 542 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 SNX29Q8TEQ0 813 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 LARP4BQ92615 738 aaKnown RBP26.83■■□□□ 1.89
TRIM54-201ENST00000296098 DUSP9Q99956 384 aaKnown RBP26.83■■□□□ 1.89
TRIM54-201ENST00000296098 MRPL44Q9H9J2 332 aaKnown RBP26.83■■□□□ 1.89
TRIM54-201ENST00000296098 ADGRG1Q9Y653 693 aa26.83■■□□□ 1.89
TRIM54-201ENST00000296098 NAP1L4Q99733 375 aaKnown RBP26.83■■□□□ 1.89
TRIM54-201ENST00000296098 ATF5Q9Y2D1 282 aaPredicted RBP26.83■■□□□ 1.89
TRIM54-201ENST00000296098 URI1O94763 535 aaPredicted RBP26.82■■□□□ 1.88
TRIM54-201ENST00000296098 FCER1AP12319 257 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 CASQ1P31415 396 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 MCM6Q14566 821 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 SEPT2Q15019 361 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 MB21D1Q8N884 522 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 C7orf43Q8WVR3 580 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 A0A1W2PQC6 194 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 CDC37Q16543 378 aaPredicted RBP26.82■■□□□ 1.88
TRIM54-201ENST00000296098 TMTC1Q8IUR5 882 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 RAD54LQ92698 747 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 WDR24Q96S15 920 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 ATRNL1Q5VV63 1379 aa26.82■■□□□ 1.88
TRIM54-201ENST00000296098 TMEM119Q4V9L6 283 aa26.81■■□□□ 1.88
TRIM54-201ENST00000296098 FAM114A1Q8IWE2 563 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms