RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 FAM160B2Q86V87 743 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 LPAR1Q92633 364 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 AS3MTQ9HBK9 375 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 ZNF112Q9UJU3 913 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 PCDHA6Q9UN73 950 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 FZD1Q9UP38 647 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 PCDHA8Q9Y5H6 950 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 PCNTO95613 3336 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 BAZ2BQ9UIF8 2168 aaKnown RBP19.01■□□□□ 0.63
CPSF4-201ENST00000292476 USP17L10C9JJH3 530 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 TMEM232C9JQI7 657 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 CBFA2T2O43439 604 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 NRDCO43847 1150 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 SLC16A2P36021 539 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 ORC2Q13416 577 aaPredicted RBP19.01■□□□□ 0.63
CPSF4-201ENST00000292476 TPD52L1Q16890 204 aaPredicted RBP19.01■□□□□ 0.63
CPSF4-201ENST00000292476 NBPF12Q5TAG4 269 aaPredicted RBP19.01■□□□□ 0.63
CPSF4-201ENST00000292476 SYDE2Q5VT97 1194 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 TYW1BQ6NUM6 668 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 REXO1Q8N1G1 1221 aaKnown RBP19.01■□□□□ 0.63
CPSF4-201ENST00000292476 FERMT2Q96AC1 680 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 PCDHB6Q9Y5E3 794 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 PAPPA2Q9BXP8 1791 aa19.01■□□□□ 0.63
CPSF4-201ENST00000292476 ECE1P42892 770 aa19■□□□□ 0.63
CPSF4-201ENST00000292476 KRBA2Q6ZNG9 492 aa19■□□□□ 0.63
CPSF4-201ENST00000292476 ERCC4Q92889 916 aaPredicted RBP19■□□□□ 0.63
CPSF4-201ENST00000292476 FEZ1Q99689 392 aa19■□□□□ 0.63
CPSF4-201ENST00000292476 AMNQ9BXJ7 453 aa19■□□□□ 0.63
CPSF4-201ENST00000292476 KCNH3Q9ULD8 1083 aa19■□□□□ 0.63
CPSF4-201ENST00000292476 SRPRBQ9Y5M8 271 aaKnown RBP19■□□□□ 0.63
CPSF4-201ENST00000292476 TUBB4AP04350 444 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 ATP2B1P20020 1258 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 PTPREP23469 700 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 USP14P54578 494 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 MYL5Q02045 173 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 NONOQ15233 471 aaKnown RBP eCLIP18.99■□□□□ 0.63
CPSF4-201ENST00000292476 CDC37Q16543 378 aaPredicted RBP18.99■□□□□ 0.63
CPSF4-201ENST00000292476 NYAP1Q6ZVC0 841 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 SCYL3Q8IZE3 742 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 ACER1Q8TDN7 264 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 CUL5Q93034 780 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 CAPNS2Q96L46 248 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 C16orf45Q96MC5 204 aaPredicted RBP18.99■□□□□ 0.63
CPSF4-201ENST00000292476 KIAA1683Q9H0B3 1180 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 RIC8AQ9NPQ8 531 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 PICK1Q9NRD5 415 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 FEM1BQ9UK73 627 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 SSC5DA1L4H1 1573 aa18.99■□□□□ 0.63
CPSF4-201ENST00000292476 A0A087WWV3 80 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 LAD1O00515 517 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 QRICH1Q2TAL8 776 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 ZNF710Q8N1W2 664 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 XPO4Q9C0E2 1151 aaKnown RBP18.98■□□□□ 0.63
CPSF4-201ENST00000292476 IFNKQ9P0W0 207 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 EARS2Q5JPH6 523 aaKnown RBP18.98■□□□□ 0.63
CPSF4-201ENST00000292476 ARL6IP4Q66PJ3 421 aaKnown RBP18.98■□□□□ 0.63
CPSF4-201ENST00000292476 KANK3Q6NY19 840 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 FILIP1Q7Z7B0 1213 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 FBXO11Q86XK2 927 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 CNNM3Q8NE01 707 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 ANKRD7Q92527 254 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 COA7Q96BR5 231 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 FBXO2Q9UK22 296 aaPredicted RBP18.98■□□□□ 0.63
CPSF4-201ENST00000292476 PCDHA1Q9Y5I3 950 aa18.98■□□□□ 0.63
CPSF4-201ENST00000292476 WDR46O15213 610 aaKnown RBP18.97■□□□□ 0.63
CPSF4-201ENST00000292476 SMC2O95347 1197 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 FKBP1BP68106 108 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 NT5DC1Q5TFE4 455 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 CEP135Q66GS9 1140 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 SPICE1Q8N0Z3 855 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 CCAR2Q8N163 923 aaKnown RBP18.97■□□□□ 0.63
CPSF4-201ENST00000292476 TRIML1Q8N9V2 468 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 NAP1L4Q99733 375 aaKnown RBP18.97■□□□□ 0.63
CPSF4-201ENST00000292476 WDR18Q9BV38 432 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 PSTPIP2Q9H939 334 aa18.97■□□□□ 0.63
CPSF4-201ENST00000292476 BIN1O00499 593 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 ATP2C1P98194 919 aaPredicted RBP18.96■□□□□ 0.63
CPSF4-201ENST00000292476 FANCCQ00597 558 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 CT47A1Q5JQC4 288 aaPredicted RBP18.96■□□□□ 0.63
CPSF4-201ENST00000292476 FAM83BQ5T0W9 1011 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 RGMBQ6NW40 437 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 CCDC34Q96HJ3 373 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 HHIPL1Q96JK4 782 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 WRNIP1Q96S55 665 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 NUP88Q99567 741 aaPredicted RBP18.96■□□□□ 0.63
CPSF4-201ENST00000292476 DACH1Q9UI36 760 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 PNMA2Q9UL42 364 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 PRR12Q9ULL5 1215 aa18.96■□□□□ 0.63
CPSF4-201ENST00000292476 FAM205CA6NFA0 338 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 CCP110O43303 1012 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 AOC2O75106 756 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 SFPQP23246 707 aaKnown RBP eCLIP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 ZNF157P51786 506 aaPredicted RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 MDM2Q00987 491 aaPredicted RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 PTPN14Q15678 1187 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 ZNF174Q15697 407 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 NOL9Q5SY16 702 aaKnown RBP18.95■□□□□ 0.62
CPSF4-201ENST00000292476 NEK8Q86SG6 692 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 CCDC112Q8NEF3 446 aa18.95■□□□□ 0.62
CPSF4-201ENST00000292476 CLIC6Q96NY7 704 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms