RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 SPEF2Q9C093 1822 aa12.79□□□□□ -0.36
CLSTN3-201ENST00000266546 EIF3CLB5ME19 914 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 PPP4CP60510 307 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 PDE4DQ08499 809 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 CRY2Q49AN0 593 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 EIF3CQ99613 913 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 IFIH1Q9BYX4 1025 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 VPS54Q9P1Q0 977 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 TCRBV5S4A2TA0A5A2 114 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 PPARDQ03181 441 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 DDR1Q08345 913 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 EZH2Q15910 746 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 TRIM58Q8NG06 486 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 NOX5Q96PH1 765 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 E7EVH7 732 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 NAPAP54920 295 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 DIXDC1Q155Q3 683 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 CFAP221Q4G0U5 840 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 GRAMD1CQ8IYS0 662 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 WDR24Q96S15 920 aa12.78□□□□□ -0.36
CLSTN3-201ENST00000266546 EIF6P56537 245 aaKnown RBP12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 AIFM3Q96NN9 605 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 GLT8D2Q9H1C3 349 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 SH2D4AQ9H788 454 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 L2HGDHQ9H9P8 463 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 MRFAP1Q9Y605 127 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 STK36Q9NRP7 1315 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 FMNL1O95466 1100 aaPredicted RBP12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 PPP1R2P41236 205 aa12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 TTC19Q6DKK2 380 aaPredicted RBP12.77□□□□□ -0.36
CLSTN3-201ENST00000266546 TRIM66O15016 1216 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 SRLQ86TD4 932 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 SPATS2Q86XZ4 545 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 KIAA0825Q8IV33 1275 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 PNMA1Q8ND90 353 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 HOOK2Q96ED9 719 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 GPR101Q96P66 508 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 GSDMAQ96QA5 445 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 SAMD15Q9P1V8 674 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 PIM2Q9P1W9 311 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 FEZ2Q9UHY8 353 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 NEDD4P46934 1319 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 ZNF76P36508 570 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 COPB1P53618 953 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 CLNS1AP54105 237 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 TNIP1Q15025 636 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 RUFY4Q6ZNE9 571 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 GPIHBP1Q8IV16 184 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 BEGAINQ9BUH8 593 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 DBNDD1Q9H9R9 158 aa12.77□□□□□ -0.37
CLSTN3-201ENST00000266546 IL1R1P14778 569 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CEP85LQ5SZL2 805 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 NCAPH2Q6IBW4 605 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CCDC50Q8IVM0 306 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 LMBR1Q8WVP7 490 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 LRRC45Q96CN5 670 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 PPANQ9NQ55 473 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 SMIM23A6NLE4 172 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 H2AFXP16104 143 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 DNM2P50570 870 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CYB5R4Q7L1T6 521 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 SMYD4Q8IYR2 804 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 SH3RF3Q8TEJ3 882 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 H7C1D1 291 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 KIF4AO95239 1232 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 USP17L8P0C7I0 530 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 STRIP1Q5VSL9 837 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 GALNT17Q6IS24 598 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 TYW1BQ6NUM6 668 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CUL5Q93034 780 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 AGXT2Q9BYV1 514 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 LY9Q9HBG7 655 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 VEZTQ9HBM0 779 aa12.76□□□□□ -0.37
CLSTN3-201ENST00000266546 CCDC172P0C7W6 258 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 TCP1P17987 556 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 SCNN1DP51172 638 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 DALRD3Q5D0E6 543 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 TADA2BQ86TJ2 420 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 DPF2Q92785 391 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 EHMT1Q9H9B1 1298 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 EPB41L4AQ9HCS5 686 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 SERPINB13Q9UIV8 391 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 SAMM50Q9Y512 469 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 COBLO75128 1261 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 PLA2G4AP47712 749 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 KCTD16Q68DU8 428 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 MMS22LQ6ZRQ5 1243 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 AKT1S1Q96B36 256 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 HYOU1Q9Y4L1 999 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 FAM205AQ6ZU69 1335 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 GUCY2FP51841 1108 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 TNFAIP1Q13829 316 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 RAPGEF1Q13905 1077 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 HHIPL2Q6UWX4 724 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 KLHL7Q8IXQ5 586 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 RIOK1Q9BRS2 568 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 FHOD1Q9Y613 1164 aa12.75□□□□□ -0.37
CLSTN3-201ENST00000266546 NUP98P52948 1817 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms