RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 LBX2Q6XYB7 198 aa11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 ANKRD23Q86SG2 305 aa11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 MYPNQ86TC9 1320 aa11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 REXO1Q8N1G1 1221 aaKnown RBP11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 USP28Q96RU2 1077 aa11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 MRPL11Q9Y3B7 192 aaKnown RBP11.15□□□□□ -0.62
SNRNP40-201ENST00000263694 MYH7BA7E2Y1 1941 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 TESPA1A2RU30 521 aaPredicted RBP11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 FIBPO43427 364 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 FDX1P10109 184 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 CLK2P49760 499 aaKnown RBP11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 GALNT17Q6IS24 598 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 FCHSD1Q86WN1 690 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 BICD2Q8TD16 824 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 CCDC102AQ96A19 550 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 PURBQ96QR8 312 aaKnown RBP11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 RNF146Q9NTX7 359 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 PCDHB6Q9Y5E3 794 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 ATP6V1DQ9Y5K8 247 aa11.14□□□□□ -0.63
SNRNP40-201ENST00000263694 CCDC194A0A1B0GVG4 234 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 MANSC4A6NHS7 340 aaPredicted RBP11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 ATP2A1O14983 1001 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 EDIL3O43854 480 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 NFKBIBQ15653 356 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 ZNF174Q15697 407 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 DEFB115Q30KQ5 88 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 NSMFQ6X4W1 530 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 CLEC17AQ6ZS10 378 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 ANKRD13CQ8N6S4 541 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 TBCKQ8TEA7 893 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 SMCR8Q8TEV9 937 aaPredicted RBP11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 TEX13BQ9BXU2 312 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 SPATC1LQ9H0A9 340 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 COL20A1Q9P218 1284 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 MRVI1Q9Y6F6 885 aa11.13□□□□□ -0.63
SNRNP40-201ENST00000263694 GCOM1H8Y6P7 765 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 ECM2O94769 699 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 POLR2MP0CAP2 368 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 MCM4P33991 863 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 OAZ1P54368 228 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 UBXN2AP68543 259 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 KRT85P78386 507 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 TRAF1Q13077 416 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 NONOQ15233 471 aaKnown RBP eCLIP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 SF3A1Q15459 793 aaKnown RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 SLC30A10Q6XR72 485 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 KRT25Q7Z3Z0 450 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 IFNL1Q8IU54 200 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 FAM177A1Q8N128 213 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 MB21D1Q8N884 522 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 HHIPL1Q96JK4 782 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 ZFP91Q96JP5 570 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 CAPNS2Q96L46 248 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 ZNF396Q96N95 335 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 GBP4Q96PP9 640 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 MOV10L1Q9BXT6 1211 aaKnown RBP11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 PNMA3Q9UL41 463 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 SLC45A1Q9Y2W3 748 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 RABGAP1Q9Y3P9 1069 aa11.12□□□□□ -0.63
SNRNP40-201ENST00000263694 POTEMA6NI47 508 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RASSF10A6NK89 507 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 POTEB2H3BUK9 544 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 GADD45BO75293 160 aaPredicted RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 PRPF40AO75400 957 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 BAATQ14032 418 aaPredicted RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 TTC38Q5R3I4 469 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ANO1Q5XXA6 986 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 NCAPG2Q86XI2 1143 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RIOX2Q8IUF8 465 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 LEO1Q8WVC0 666 aaPredicted RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ANO3Q9BYT9 981 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 CPA4Q9UI42 421 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ZNFX1Q9P2E3 1918 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 PIK3CDO00329 1044 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ERCC3P19447 782 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 MCM7P33993 719 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 HSD17B4P51659 736 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RPS6P62753 249 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ERVK-9P63128 1117 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ERVK-24P63145 666 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 TAF1CQ15572 869 aaPredicted RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 LETM2Q2VYF4 491 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RILPL1Q5EBL4 403 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 SPATA32Q96LK8 384 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 TAAR1Q96RJ0 339 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 UIMC1Q96RL1 719 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 GLT8D2Q9H1C3 349 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 PORCNQ9H237 461 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 ACAD9Q9H845 621 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 EFCC1Q9HA90 598 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RTEL1Q9NZ71 1219 aa11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 DDX49Q9Y6V7 483 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 RBBP6Q7Z6E9 1792 aaKnown RBP11.11□□□□□ -0.63
SNRNP40-201ENST00000263694 LCTP09848 1927 aa11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 SPDYE3A6NKU9 549 aa11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 MARCKSP29966 332 aaPredicted RBP11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 TM4SF4P48230 202 aa11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 STK38Q15208 465 aa11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 PTPAQ15257 358 aa11.1□□□□□ -0.63
SNRNP40-201ENST00000263694 WDR78Q5VTH9 848 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms