RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 USP17L1Q7RTZ2 530 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 LRRC8AQ8IWT6 810 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 MAP4K1Q92918 833 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 MAD1L1Q9Y6D9 718 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 FBXO18Q8NFZ0 1043 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 SCYL1Q96KG9 808 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 SLC5A4Q9NY91 659 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 EXOC3L4Q17RC7 722 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 TBCKQ8TEA7 893 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 HESX1Q9UBX0 185 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 PCDHB4Q9Y5E5 795 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 MYL7Q01449 175 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 COPRSQ9NQ92 184 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 KDM5AP29375 1690 aaKnown RBP20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 SLC4A1P02730 911 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 ZNF653Q96CK0 615 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 AMNQ9BXJ7 453 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 HYOU1Q9Y4L1 999 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 CARMIL3Q8ND23 1372 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 YEATS2Q9ULM3 1422 aa20.46■□□□□ 0.87
SMARCC1-201ENST00000254480 INO80B-WBP1J3KQ70 363 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 COPB1P53618 953 aaKnown RBP20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 ANKRD20A3Q5VUR7 823 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 GABPB2Q8TAK5 448 aaPredicted RBP20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 INO80BQ9C086 356 aaPredicted RBP20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 CD2APQ9Y5K6 639 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 SPATA1Q5VX52 437 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 AFAP1L2Q8N4X5 818 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 ZNF148Q9UQR1 794 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 SNX1Q13596 522 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 ZBTB33Q86T24 672 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 SKA2Q8WVK7 121 aaPredicted RBP20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 CACNB3P54284 484 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 HADHQ16836 314 aaKnown RBP20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 OSBP2Q969R2 916 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 PARP2Q9UGN5 583 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 NLGN1Q8N2Q7 840 aa20.45■□□□□ 0.86
SMARCC1-201ENST00000254480 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 NR2F2P24468 414 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 HOXA13P31271 388 aaPredicted RBP20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 DPCR1Q3MIW9 517 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 TUBGCP2Q9BSJ2 902 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 TTLL1O95922 423 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 SMYD2Q9NRG4 433 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 PCDHA4Q9UN74 947 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 SNAP23O00161 211 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 SATB1Q01826 763 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 RIC8AQ9NPQ8 531 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 MTMR3Q13615 1198 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 KCTD2Q14681 263 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 LARP4BQ92615 738 aaKnown RBP20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 ZNF215Q9UL58 517 aaPredicted RBP20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 PYCARDQ9ULZ3 195 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 TTC36A6NLP5 189 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 H7C0C1 242 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 THAP12O43422 761 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 ATP5OP48047 213 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 GNGT1P63211 74 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 DISP1Q96F81 1524 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 KIF21AQ7Z4S6 1674 aa20.44■□□□□ 0.86
SMARCC1-201ENST00000254480 LONP1P36776 959 aaKnown RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 KIF24Q5T7B8 1368 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 RPS6KA2Q15349 733 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 KCTD16Q68DU8 428 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 NRBP2Q9NSY0 501 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 CXCR5P32302 372 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 ADD2P35612 726 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 ARPP19P56211 112 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 KIF22Q14807 665 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 C11orf57Q6ZUT1 292 aaPredicted RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 GAS2L3Q86XJ1 694 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 CACNA2D3Q8IZS8 1091 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 PLCB1Q9NQ66 1216 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 FNDC3AQ9Y2H6 1198 aaKnown RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 NSUN7Q8NE18 718 aaKnown RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 BAIAP2L1Q9UHR4 511 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 FMNL1O95466 1100 aaPredicted RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 NSFP46459 744 aaKnown RBP20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 BFSP1Q12934 665 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 PPFIA1Q13136 1202 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 NUB1Q9Y5A7 615 aa20.43■□□□□ 0.86
SMARCC1-201ENST00000254480 GOLGA8SH3BPF8 625 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 LARGE1O95461 756 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 H2AFZP0C0S5 128 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 SH2D4BQ5SQS7 431 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 H2AFVQ71UI9 128 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 EPN1Q9Y6I3 576 aaPredicted RBP20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 PLXNC1O60486 1568 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 MARK3P27448 753 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 NOP9Q86U38 636 aaKnown RBP20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 ATP2A3Q93084 1043 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 SRGAP1Q7Z6B7 1085 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 MAIP1Q8WWC4 291 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 CCDC51Q96ER9 411 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 POC1B-GALNT4F8VUJ3 575 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 DYNLT1P63172 113 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 GUCY2DQ02846 1103 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 PI4K2BQ8TCG2 481 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 RPS6KC1Q96S38 1066 aa20.42■□□□□ 0.86
SMARCC1-201ENST00000254480 NUF2Q9BZD4 464 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms