RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SIK1P57059 783 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 PPP2R5AQ15172 486 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ZNF713Q8N859 430 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 DDX17Q92841 729 aaKnown RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 CAPS2Q9BXY5 557 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 SUGCTQ9HAC7 445 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ATG3Q9NT62 314 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ZNF148Q9UQR1 794 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 THRAP3Q9Y2W1 955 aaKnown RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ATP10DQ9P241 1426 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ADCK5Q3MIX3 580 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 PCDHA4Q9UN74 947 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 PFDN6O15212 129 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 LPXNO60711 386 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 GAP43P17677 238 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 MFAP3P55082 362 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 CYP4A11Q02928 519 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 POLA2Q14181 598 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 TMC4Q7Z404 712 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 CEP120Q8N960 986 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 MED10Q9BTT4 135 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 VCX3AQ9NNX9 186 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 CCPG1Q9ULG6 757 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 CASP14P31944 242 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 NSUN7Q8NE18 718 aaKnown RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 PRPF31Q8WWY3 499 aaKnown RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 POMGNT1Q8WZA1 660 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 ATP6V0A1Q93050 837 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 NT5C1BQ96P26 610 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 LRRIQ4A6NIV6 560 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 HIP1RO75146 1068 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 HOXA7P31268 230 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-201ENST00000215793 PPARDQ03181 441 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 MUM1L1Q5H9M0 696 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 FAM160B1Q5W0V3 765 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 BCAS4Q8TDM0 211 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 CARMIL3Q8ND23 1372 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 TCP10L2B9ZVM9 353 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 TRIM11Q96F44 468 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 PLEKHF1Q96S99 279 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 FKBP3Q00688 224 aaKnown RBP14.81□□□□□ -0.04
SF3A1-201ENST00000215793 EHHADHQ08426 723 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 FAM81BQ96LP2 452 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 JPH2Q9BR39 696 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-201ENST00000215793 NR2F2P24468 414 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 LRCH2Q5VUJ6 765 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 CDKL2Q92772 493 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 KDM5DQ9BY66 1539 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 ABCC12Q96J65 1359 aa14.81□□□□□ -0.04
SF3A1-201ENST00000215793 PPP1R2P3Q6NXS1 205 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 PUS3Q9BZE2 481 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 WDR11Q9BZH6 1224 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 CACYBPQ9HB71 228 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 HNRNPDLO14979 420 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 SLFN14P0C7P3 912 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 ADORA1P30542 326 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 CUL4AQ13619 759 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 TRMT2AQ8IZ69 625 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 ANKRD13CQ8N6S4 541 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 P2RX5Q93086 422 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 CSRNP1Q96S65 589 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 STK17AQ9UEE5 414 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 PALM3A6NDB9 673 aaPredicted RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 ATP8B1O43520 1251 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 MYL7Q01449 175 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 TFDP1Q14186 410 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 DOK7Q18PE1 504 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 RINT1Q6NUQ1 792 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 IFT122Q9HBG6 1241 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 RCOR1Q9UKL0 485 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 XPOTO43592 962 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 TTLL1O95922 423 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 ZNF853P0CG23 659 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 PSMC2P35998 433 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 GUCY2DQ02846 1103 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 USPL1Q5W0Q7 1092 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 EIF3CLB5ME19 914 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 ATP1A2P50993 1020 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 SATB1Q01826 763 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 SF3A3Q12874 501 aaKnown RBP eCLIP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 MAN2A1Q16706 1144 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 FAM47CQ5HY64 1035 aa14.8□□□□□ -0.04
SF3A1-201ENST00000215793 EIF3CQ99613 913 aaKnown RBP14.8□□□□□ -0.04
SF3A1-201ENST00000215793 MLH3Q9UHC1 1453 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 ARHGAP42A6NI28 874 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 NT5C2P49902 561 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 RASSF7Q02833 373 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.79□□□□□ -0.04
SF3A1-201ENST00000215793 FAM114A2Q9NRY5 505 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 STK38LQ9Y2H1 464 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 IGSF1Q8N6C5 1336 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 IFNAR1P17181 557 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 LTKP29376 864 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 KMT5BQ4FZB7 885 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 CCDC68Q9H2F9 335 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 RNF14Q9UBS8 474 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 ADD2P35612 726 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 KIF23Q02241 960 aaPredicted RBP14.79□□□□□ -0.04
SF3A1-201ENST00000215793 BIRC2Q13490 618 aa14.79□□□□□ -0.04
SF3A1-201ENST00000215793 SPOUT1Q5T280 376 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms