RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 NCAPHQ15003 741 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 PFKFB3Q16875 520 aaPredicted RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 EMBQ6PCB8 327 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 NEK8Q86SG6 692 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 PROM2Q8N271 834 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 MAPK8IP1Q9UQF2 711 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ADGRG1Q9Y653 693 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 SOS2Q07890 1332 aaPredicted RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ANO9A1A5B4 782 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 GSG1L2A8MUP6 293 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ZBED6P86452 979 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 CASP8Q14790 479 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 DDX12PQ92771 950 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 CNOT6LQ96LI5 555 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 MMRN2Q9H8L6 949 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 STK17AQ9UEE5 414 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 NINQ8N4C6 2090 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 USP17L12C9JPN9 530 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 USP17L21D6R901 530 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 EPHB4P54760 987 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 MTMR3Q13615 1198 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 FAM204AQ9H8W3 233 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 THRAP3Q9Y2W1 955 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ORC4O43929 436 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 CALRP27797 417 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 CCDC93Q567U6 631 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ADD3Q9UEY8 706 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ROBO1Q9Y6N7 1651 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 hCG_1642624A0A1W2PR95 340 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 NOP2P46087 812 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 MRPL12P52815 198 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 SCARF1Q14162 830 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ALS2CLQ60I27 953 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 TC2NQ8N9U0 490 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 SEPT11Q9NVA2 429 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 HYOU1Q9Y4L1 999 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 EFCAB13Q8IY85 973 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 C10orf67Q8IYJ2 551 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ACRBPQ8NEB7 543 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 PSD3Q9NYI0 1048 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 ZBTB1Q9Y2K1 713 aa6.17□□□□□ -1.42
SCN3A-210ENST00000640652 TNRC6CQ9HCJ0 1690 aaKnown RBP6.17□□□□□ -1.42
SCN3A-210ENST00000640652 SEC31AO94979 1220 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 HLFQ16534 295 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GLE1Q53GS7 698 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 TYW1BQ6NUM6 668 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 CNBD1Q8NA66 436 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 EYA3Q99504 573 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 STIM2Q9P246 746 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 FHOD1Q9Y613 1164 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 CALUO43852 315 aaPredicted RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GOLGA8FQ08AF8 430 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GOLGA8DPQ0D2H9 430 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 CCDC26Q8TAB7 109 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 LARP4BQ92615 738 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 LRRC45Q96CN5 670 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 PHF20Q9BVI0 1012 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 NHEJ1Q9H9Q4 299 aaPredicted RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 UTP11Q9Y3A2 253 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 B4DLN1 442 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 TRAF5O00463 557 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RNF40O75150 1001 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GBP1P32455 592 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RFC4P35249 363 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 NTRK3Q16288 839 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 PPP4R3CPQ6ZMV5 832 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 BRINP3Q76B58 766 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 P2RX5Q93086 422 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 NSRP1Q9H0G5 558 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 ANAPC4Q9UJX5 808 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 FAM184BQ9ULE4 1060 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 LOC102724428A0A0B4J2F2 783 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 EPB41P11171 864 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 SIK1P57059 783 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RAPGEF1Q13905 1077 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GPKOWQ92917 476 aaPredicted RBP eCLIP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 ZNF804BA4D1E1 1349 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 TMEM232C9JQI7 657 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 GYG1P46976 350 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 PSMD2Q13200 908 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 SLC4A8Q2Y0W8 1093 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 MCTP2Q6DN12 878 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RUFY4Q6ZNE9 571 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 DGKHQ86XP1 1220 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RTCBQ9Y3I0 505 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 LRP5O75197 1615 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 CHGBP05060 677 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RPS8P62241 208 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 CFAP58Q5T655 872 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 TCERG1LQ5VWI1 586 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 AEBP2Q6ZN18 517 aaPredicted RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 USP37Q86T82 979 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 HOOK3Q86VS8 718 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 WHAMMQ8TF30 809 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 FRMD4BQ9Y2L6 1034 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 XRCC5P13010 732 aaKnown RBP6.16□□□□□ -1.42
SCN3A-210ENST00000640652 PLCG1P19174 1290 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 MNAT1P51948 309 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 SLFN12Q8IYM2 578 aa6.16□□□□□ -1.42
SCN3A-210ENST00000640652 RNF10Q8N5U6 811 aaKnown RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms