RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	SLC5A4	Q9NY91	659 aa		31.08	■■■□□ 2.57
VEGFA-231	ENST00000640499	CYP39A1	Q9NYL5	469 aa		31.08	■■■□□ 2.57
VEGFA-231	ENST00000640499	ASTN1	O14525	1302 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	RPS6KB1	P23443	525 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	GJA8	P48165	433 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	C8orf34	Q49A92	452 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	PRAMEF19	Q5SWL8	479 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	MFSD14C	Q5VZR4	134 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	BLOC1S2	Q6QNY1	142 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	DEFB118	Q96PH6	123 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	PURB	Q96QR8	312 aa	Known RBP	31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	SLC12A7	Q9Y666	1083 aa		31.07	■■■□□ 2.56
VEGFA-231	ENST00000640499	USH1G	Q495M9	461 aa		31.06	■■■□□ 2.56
VEGFA-231	ENST00000640499	APOA5	Q6Q788	366 aa		31.06	■■■□□ 2.56
VEGFA-231	ENST00000640499	CCDC144CP	Q8IYA2	1237 aa		31.06	■■■□□ 2.56
VEGFA-231	ENST00000640499	ZSWIM6	Q9HCJ5	1215 aa		31.06	■■■□□ 2.56
VEGFA-231	ENST00000640499	MYH6	P13533	1939 aa		31.06	■■■□□ 2.56
VEGFA-231	ENST00000640499	SOWAHB	A6NEL2	793 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	DHX16	O60231	1041 aa	Known RBP	31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	PLEKHA8P1	O95397	391 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	SGPL1	O95470	568 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	CYBA	P13498	195 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	CAST	P20810	708 aa	Known RBP	31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499		Q6ZUG5	572 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	FBXL16	Q8N461	479 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	SRBD1	Q8N5C6	995 aa	Known RBP	31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	FANCB	Q8NB91	859 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	U2AF1L4	Q8WU68	220 aa	Known RBP	31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	PIGS	Q96S52	555 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	TINF2	Q9BSI4	451 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	AGXT2	Q9BYV1	514 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	CRISPLD2	Q9H0B8	497 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	PNMA2	Q9UL42	364 aa		31.05	■■■□□ 2.56
VEGFA-231	ENST00000640499	BAAT	Q14032	418 aa	Predicted RBP	31.04	■■■□□ 2.56
VEGFA-231	ENST00000640499	MAMDC4	Q6UXC1	1216 aa		31.04	■■■□□ 2.56
VEGFA-231	ENST00000640499	CMTR1	Q8N1G2	835 aa	Known RBP	31.04	■■■□□ 2.56
VEGFA-231	ENST00000640499	CTCFL	Q8NI51	663 aa	Predicted RBP	31.04	■■■□□ 2.56
VEGFA-231	ENST00000640499	TBC1D5	Q92609	795 aa		31.04	■■■□□ 2.56
VEGFA-231	ENST00000640499	ZBTB5	O15062	677 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	SNAI1	O95863	264 aa	Predicted RBP	31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	CALM1	P0DP23	149 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	CALM2	P0DP24	149 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	CALM3	P0DP25	149 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	PSMA5	P28066	241 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	LHX8	Q68G74	356 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	NSMF	Q6X4W1	530 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	ZNF467	Q7Z7K2	595 aa	Predicted RBP	31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	FBXO11	Q86XK2	927 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	TM6SF1	Q9BZW5	370 aa		31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	FAM217B	Q9NTX9	383 aa	Predicted RBP	31.03	■■■□□ 2.56
VEGFA-231	ENST00000640499	MKI67	P46013	3256 aa	Known RBP	31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	PFAS	O15067	1338 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	POTEB2	H3BUK9	544 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	OPLAH	O14841	1288 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	SLC30A10	Q6XR72	485 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	RUFY3	Q7L099	469 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	MICU3	Q86XE3	530 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	SPZ1	Q9BXG8	430 aa		31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	DDX49	Q9Y6V7	483 aa	Known RBP	31.02	■■■□□ 2.56
VEGFA-231	ENST00000640499	MCM3AP	O60318	1980 aa		31.01	■■■□□ 2.56
VEGFA-231	ENST00000640499	SMARCA1	P28370	1054 aa		31.01	■■■□□ 2.55
VEGFA-231	ENST00000640499	KIF5B	P33176	963 aa		31.01	■■■□□ 2.55
VEGFA-231	ENST00000640499	APOBR	Q0VD83	1088 aa		31.01	■■■□□ 2.55
VEGFA-231	ENST00000640499	HOMER1	Q86YM7	354 aa		31.01	■■■□□ 2.55
VEGFA-231	ENST00000640499	BRF1	Q92994	677 aa		31.01	■■■□□ 2.55
VEGFA-231	ENST00000640499	ABCB11	O95342	1321 aa		31	■■■□□ 2.55
VEGFA-231	ENST00000640499	KLF18	A0A0U1RQI7	1052 aa		31	■■■□□ 2.55
VEGFA-231	ENST00000640499	MSL3	Q8N5Y2	521 aa	Known RBP	31	■■■□□ 2.55
VEGFA-231	ENST00000640499	IL17RA	Q96F46	866 aa		31	■■■□□ 2.55
VEGFA-231	ENST00000640499	AMN	Q9BXJ7	453 aa		31	■■■□□ 2.55
VEGFA-231	ENST00000640499	UPF3B	Q9BZI7	483 aa	Known RBP	31	■■■□□ 2.55
VEGFA-231	ENST00000640499	GTF3C3	Q9Y5Q9	886 aa		31	■■■□□ 2.55
VEGFA-231	ENST00000640499	ZNF865	P0CJ78	1059 aa	Predicted RBP	30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	RPS6	P62753	249 aa	Known RBP	30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	TOB2	Q14106	344 aa	Predicted RBP	30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	TMTC3	Q6ZXV5	915 aa		30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	RGS22	Q8NE09	1264 aa		30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	PIBF1	Q8WXW3	757 aa		30.99	■■■□□ 2.55
VEGFA-231	ENST00000640499	SYNGAP1	Q96PV0	1343 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	PNMA6F	A0A0J9YX94	578 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	ZBTB43	O43298	467 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	GNAQ	P50148	359 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	MNX1	P50219	401 aa	Predicted RBP	30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	FUT2	Q10981	343 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	RNF207	Q6ZRF8	634 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	UBE2Q1	Q7Z7E8	422 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	LZTS2	Q9BRK4	669 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	KATNBL1	Q9H079	304 aa		30.98	■■■□□ 2.55
VEGFA-231	ENST00000640499	CDC27	P30260	824 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	EVC	P57679	992 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	SYNE3	Q6ZMZ3	975 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	OGDHL	Q9ULD0	1010 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	PCDHA1	Q9Y5I3	950 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	CYP46A1	Q9Y6A2	500 aa		30.97	■■■□□ 2.55
VEGFA-231	ENST00000640499	PTPDC1	A2A3K4	754 aa		30.96	■■■□□ 2.55
VEGFA-231	ENST00000640499	TNRC18	O15417	2968 aa	Predicted RBP	30.96	■■■□□ 2.55
VEGFA-231	ENST00000640499	ARMCX2	Q7L311	632 aa		30.96	■■■□□ 2.55
VEGFA-231	ENST00000640499	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	30.96	■■■□□ 2.55
VEGFA-231	ENST00000640499	COL20A1	Q9P218	1284 aa		30.96	■■■□□ 2.55
VEGFA-231	ENST00000640499	DDX20	Q9UHI6	824 aa	Known RBP	30.96	■■■□□ 2.55

Retrieved 100 of 20,778 RNA–protein pairs in 22 ms