RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PPP6R2	O75170	966 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	ITGBL1	O95965	494 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	BMP15	O95972	392 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	DSG3	P32926	999 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	ME1	P48163	572 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	FMR1	Q06787	632 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	NONO	Q15233	471 aa	Known RBP eCLIP	13.45	□□□□□ -0.26	6e-7	■■■□□ 17.3
CLN6-223	ENST00000637823	PTPA	Q15257	358 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	USH1G	Q495M9	461 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	NOM1	Q5C9Z4	860 aa	Known RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	CCDC174	Q6PII3	467 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	PRRT2	Q7Z6L0	340 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	JMY	Q8N9B5	988 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	GPT2	Q8TD30	523 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	RASGRP4	Q8TDF6	673 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	CNKSR2	Q8WXI2	1034 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	OTUD5	Q96G74	571 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	ANP32E	Q9BTT0	268 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	SLC38A10	Q9HBR0	1119 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	HOXC10	Q9NYD6	342 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	BIN2	Q9UBW5	565 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	ADAMTS5	Q9UNA0	930 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	MRPL11	Q9Y3B7	192 aa	Known RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	PCDHB6	Q9Y5E3	794 aa		13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN6-223	ENST00000637823	MYPN	Q86TC9	1320 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	VWA5A	O00534	786 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	IRF6	O14896	467 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	CELF2	O95319	508 aa	Known RBP	13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	ICAM1	P05362	532 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	ATP2B1	P20020	1258 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	HOXA7	P31268	230 aa	Predicted RBP	13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	CLK2	P49760	499 aa	Known RBP	13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	TTC38	Q5R3I4	469 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	JAKMIP3	Q5VZ66	844 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	ADAL	Q6DHV7	355 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	FASTKD5	Q7L8L6	764 aa	Known RBP	13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	OPTN	Q96CV9	577 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	PGBD1	Q96JS3	809 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	PCDHA7	Q9UN72	937 aa		13.44	□□□□□ -0.26
CLN6-223	ENST00000637823	PIK3CD	O00329	1044 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	FOS	P01100	380 aa	Predicted RBP	13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	ZNF174	Q15697	407 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	INF2	Q27J81	1249 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	GADL1	Q6ZQY3	521 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	TMEM260	Q9NX78	707 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	CCPG1	Q9ULG6	757 aa		13.43	□□□□□ -0.26
CLN6-223	ENST00000637823	ZNF536	O15090	1300 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823		A0A1W2PQ27	194 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823		A0A1W2PQ64	194 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823		A0A1W2PQD8	194 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	MEIS2	O14770	477 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	CUTA	O60888	179 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	OAZ1	P54368	228 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	AP3B2	Q13367	1082 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	ORC2	Q13416	577 aa	Predicted RBP	13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	UBE2S	Q16763	222 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	NEK8	Q86SG6	692 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	SAMD3	Q8N6K7	520 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	ATG4C	Q96DT6	458 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	AGBL1	Q96MI9	1066 aa		13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.42	□□□□□ -0.26
CLN6-223	ENST00000637823	OPLAH	O14841	1288 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	MARCKS	P29966	332 aa	Predicted RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	GJA5	P36382	358 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	SNAPC2	Q13487	334 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	TREML2	Q5T2D2	321 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	CST9	Q5W186	159 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	USP17L6P	Q6QN14	398 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	CPXCR1	Q8N123	301 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	KRI1	Q8N9T8	703 aa	Known RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	TBCK	Q8TEA7	893 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	WNK4	Q96J92	1243 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	NAP1L4	Q99733	375 aa	Known RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	RAVER2	Q9HCJ3	691 aa	Known RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	MAP3K20	Q9NYL2	800 aa	Known RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	AGTPBP1	Q9UPW5	1226 aa		13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	SRPRB	Q9Y5M8	271 aa	Known RBP	13.41	□□□□□ -0.26
CLN6-223	ENST00000637823	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	WNT7A	O00755	349 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	ATP2A1	O14983	1001 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	POLR2M	P0CAP2	368 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	PTPRE	P23469	700 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	CMA1	P23946	247 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	MCM7	P33993	719 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	USP11	P51784	963 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	GTF2A2	P52657	109 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	ATP2C1	P98194	919 aa	Predicted RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	PTGDR	Q13258	359 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	MOGS	Q13724	837 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	TKFC	Q3LXA3	575 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	TPRN	Q4KMQ1	711 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	MCF2L2	Q86YR7	1114 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms