RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SNAP25P60880 206 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 NKX3-2P78367 333 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 LRRFIP1Q32MZ4 808 aaKnown RBP23.05■■□□□ 1.28
CLN3-262ENST00000637699 FAM160B2Q86V87 743 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 AP5M1Q9H0R1 490 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 NAPBQ9H115 298 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 IL23AQ9NPF7 189 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 DYNC1LI2O43237 492 aaPredicted RBP23.04■■□□□ 1.28
CLN3-262ENST00000637699 PPARAQ07869 468 aa23.04■■□□□ 1.28
CLN3-262ENST00000637699 TLK2Q86UE8 772 aa23.04■■□□□ 1.28
CLN3-262ENST00000637699 GMCL1Q96IK5 515 aa23.04■■□□□ 1.28
CLN3-262ENST00000637699 HIPK3Q9H422 1215 aa23.04■■□□□ 1.28
CLN3-262ENST00000637699 MSRAQ9UJ68 235 aa23.04■■□□□ 1.28
CLN3-262ENST00000637699 GNEQ9Y223 722 aaKnown RBP23.04■■□□□ 1.28
CLN3-262ENST00000637699 FGBP02675 491 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 ITGA7Q13683 1181 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 FSCN1Q16658 493 aaKnown RBP23.03■■□□□ 1.28
CLN3-262ENST00000637699 TKFCQ3LXA3 575 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 KCTD1Q719H9 257 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 EEPD1Q7L9B9 569 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 SLC43A3Q8NBI5 491 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 HERVK_113Q902F9 699 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 PDGFCQ9NRA1 345 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 CXXC1Q9P0U4 656 aaPredicted RBP23.03■■□□□ 1.28
CLN3-262ENST00000637699 UMODL1Q5DID0 1318 aa23.03■■□□□ 1.28
CLN3-262ENST00000637699 CABYRO75952 493 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 SMPD1P17405 629 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 CCL23P55773 120 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 MUM1L1Q5H9M0 696 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 TRPV6Q9H1D0 765 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 STX8Q9UNK0 236 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 GRIN2DO15399 1336 aa23.02■■□□□ 1.28
CLN3-262ENST00000637699 MUC3AQ02505 3323 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 RAB30Q15771 203 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 CCDC85BQ15834 202 aaPredicted RBP23.01■■□□□ 1.27
CLN3-262ENST00000637699 TMEM63BQ5T3F8 832 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 RCSD1Q6JBY9 416 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 OTOP2Q7RTS6 562 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 FBXO16Q8IX29 292 aaPredicted RBP23.01■■□□□ 1.27
CLN3-262ENST00000637699 FSD1Q9BTV5 496 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 MTIF3Q9H2K0 278 aaKnown RBP23.01■■□□□ 1.27
CLN3-262ENST00000637699 NKX2-4Q9H2Z4 354 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 INCENPQ9NQS7 918 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 PRR12Q9ULL5 1215 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 MTMR7Q9Y216 660 aa23.01■■□□□ 1.27
CLN3-262ENST00000637699 TSPY2A6NKD2 308 aa23■■□□□ 1.27
CLN3-262ENST00000637699 ZEB2O60315 1214 aa23■■□□□ 1.27
CLN3-262ENST00000637699 NMT2O60551 498 aa23■■□□□ 1.27
CLN3-262ENST00000637699 IGFBP4P22692 258 aa23■■□□□ 1.27
CLN3-262ENST00000637699 PSMC6P62333 389 aa23■■□□□ 1.27
CLN3-262ENST00000637699 CTDSPL2Q05D32 466 aa23■■□□□ 1.27
CLN3-262ENST00000637699 ADGRE1Q14246 886 aa23■■□□□ 1.27
CLN3-262ENST00000637699 AKNAD1Q5T1N1 836 aa23■■□□□ 1.27
CLN3-262ENST00000637699 TAPT1Q6NXT6 567 aa23■■□□□ 1.27
CLN3-262ENST00000637699 RASGRP2Q7LDG7 609 aa23■■□□□ 1.27
CLN3-262ENST00000637699 PURBQ96QR8 312 aaKnown RBP23■■□□□ 1.27
CLN3-262ENST00000637699 CYP39A1Q9NYL5 469 aa23■■□□□ 1.27
CLN3-262ENST00000637699 TNFRSF10AO00220 468 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 B4GALT4O60513 344 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 PLA2G6O60733 806 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 ZMYM1Q5SVZ6 1142 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 IQSEC1Q6DN90 963 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 NSMFQ6X4W1 530 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 PI4K2BQ8TCG2 481 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 NOC4LQ9BVI4 516 aaKnown RBP22.99■■□□□ 1.27
CLN3-262ENST00000637699 SLC28A3Q9HAS3 691 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 IL17RBQ9NRM6 502 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 YBX2Q9Y2T7 364 aaKnown RBP22.99■■□□□ 1.27
CLN3-262ENST00000637699 TTC41PQ6P2S7 1318 aa22.99■■□□□ 1.27
CLN3-262ENST00000637699 ERC2O15083 957 aa22.98■■□□□ 1.27
CLN3-262ENST00000637699 PPP4R3BQ5MIZ7 849 aa22.98■■□□□ 1.27
CLN3-262ENST00000637699 KIAA1211Q6ZU35 1233 aa22.98■■□□□ 1.27
CLN3-262ENST00000637699 OTUD7AQ8TE49 926 aaPredicted RBP22.98■■□□□ 1.27
CLN3-262ENST00000637699 ATXN2LQ8WWM7 1075 aaKnown RBP22.98■■□□□ 1.27
CLN3-262ENST00000637699 CCPG1Q9ULG6 757 aa22.98■■□□□ 1.27
CLN3-262ENST00000637699 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.98■■□□□ 1.27
CLN3-262ENST00000637699 CHD7Q9P2D1 2997 aa22.97■■□□□ 1.27
CLN3-262ENST00000637699 WNT8AQ9H1J5 351 aa22.97■■□□□ 1.27
CLN3-262ENST00000637699 THEGQ9P2T0 379 aa22.97■■□□□ 1.27
CLN3-262ENST00000637699 RANBP6O60518 1105 aaKnown RBP22.96■■□□□ 1.27
CLN3-262ENST00000637699 RABGGTBP53611 331 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 CCDC96Q2M329 555 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 SCLYQ96I15 445 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 ASB2Q96Q27 587 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 SEZ6LQ9BYH1 1024 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 VTA1Q9NP79 307 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 Q9Y3F1 56 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 LRRC37A2A6NM11 1700 aa22.96■■□□□ 1.27
CLN3-262ENST00000637699 FOXP2O15409 715 aa22.95■■□□□ 1.26
CLN3-262ENST00000637699 RPUSD2Q8IZ73 545 aaKnown RBP22.95■■□□□ 1.26
CLN3-262ENST00000637699 GBF1Q92538 1859 aa22.95■■□□□ 1.26
CLN3-262ENST00000637699 SLC4A7Q9Y6M7 1214 aa22.95■■□□□ 1.26
CLN3-262ENST00000637699 ICAM1P05362 532 aa22.94■■□□□ 1.26
CLN3-262ENST00000637699 SLC16A2P36021 539 aa22.94■■□□□ 1.26
CLN3-262ENST00000637699 BAATQ14032 418 aaPredicted RBP22.94■■□□□ 1.26
CLN3-262ENST00000637699 TTBK2Q6IQ55 1244 aa22.94■■□□□ 1.26
CLN3-262ENST00000637699 ALDH8A1Q9H2A2 487 aaPredicted RBP22.94■■□□□ 1.26
CLN3-262ENST00000637699 ZBBXA8MT70 800 aa22.93■■□□□ 1.26
CLN3-262ENST00000637699 MYOGP15173 224 aa22.93■■□□□ 1.26
CLN3-262ENST00000637699 MRPS5P82675 430 aaKnown RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms