RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 VWA5AO00534 786 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 HUNKP57058 714 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 DNM1Q05193 864 aaKnown RBP16.19■□□□□ 0.18
CLN3-242ENST00000635958 TREML2Q5T2D2 321 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 MYSM1Q5VVJ2 828 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 SPRYD7Q5W111 196 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 LRSAM1Q6UWE0 723 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 SAPCD2Q86UD0 394 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 BICD2Q8TD16 824 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 PDLIM2Q96JY6 352 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 RIC8AQ9NPQ8 531 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 AGTPBP1Q9UPW5 1226 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 ADAMTS3O15072 1205 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 ZBED4O75132 1171 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 ICAM1P05362 532 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 NCLP19338 710 aaKnown RBP16.19■□□□□ 0.18
CLN3-242ENST00000635958 GNL2Q13823 731 aaKnown RBP16.19■□□□□ 0.18
CLN3-242ENST00000635958 GPAT2Q6NUI2 795 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 CAVIN1Q6NZI2 390 aaKnown RBP16.19■□□□□ 0.18
CLN3-242ENST00000635958 GADL1Q6ZQY3 521 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 REPS2Q8NFH8 660 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 CHAMP1Q96JM3 812 aa16.19■□□□□ 0.18
CLN3-242ENST00000635958 TCHHQ07283 1943 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 ATP2A1O14983 1001 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 PRPF40AO75400 957 aaKnown RBP16.18■□□□□ 0.18
CLN3-242ENST00000635958 OFD1O75665 1012 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 GTF2A2P52657 109 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 MRPL12P52815 198 aaKnown RBP16.18■□□□□ 0.18
CLN3-242ENST00000635958 OAZ1P54368 228 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 ATG4CQ96DT6 458 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 PSTPIP2Q9H939 334 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 PCDHA6Q9UN73 950 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 PCDHA8Q9Y5H6 950 aa16.18■□□□□ 0.18
CLN3-242ENST00000635958 CETPP11597 493 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 APLP1P51693 650 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 ADCY7P51828 1080 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 KRT85P78386 507 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 CSPP1Q1MSJ5 1256 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 FOXD4L6Q3SYB3 417 aaPredicted RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 CCDC174Q6PII3 467 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 FOXD4L3Q6VB84 417 aaPredicted RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 LBX2Q6XYB7 198 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 ZNF396Q96N95 335 aaPredicted RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 CFAP45Q9UL16 551 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 TLL2Q9Y6L7 1015 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 SMCHD1A6NHR9 2005 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 ABCB11O95342 1321 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 SPDYE16A6NNV3 312 aaPredicted RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 CLK2P49760 499 aaKnown RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 PABPC4Q13310 644 aaKnown RBP eCLIP16.17■□□□□ 0.183e-6■■■■□ 26.6
CLN3-242ENST00000635958 EARS2Q5JPH6 523 aaKnown RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 CUL5Q93034 780 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 SLC45A1Q9Y2W3 748 aa16.17■□□□□ 0.18
CLN3-242ENST00000635958 MRPL11Q9Y3B7 192 aaKnown RBP16.17■□□□□ 0.18
CLN3-242ENST00000635958 OPLAHO14841 1288 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 ZNF500O60304 480 aaPredicted RBP16.16■□□□□ 0.18
CLN3-242ENST00000635958 LETM1O95202 739 aaPredicted RBP16.16■□□□□ 0.18
CLN3-242ENST00000635958 USH1GQ495M9 461 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 RILPL1Q5EBL4 403 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 TMEM87AQ8NBN3 555 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 HHIPL1Q96JK4 782 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 AGBL1Q96MI9 1066 aa16.16■□□□□ 0.18
CLN3-242ENST00000635958 ASCC2Q9H1I8 757 aaPredicted RBP16.16■□□□□ 0.18
CLN3-242ENST00000635958 NOL7Q9UMY1 257 aaKnown RBP16.16■□□□□ 0.18
CLN3-242ENST00000635958 TESPA1A2RU30 521 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 PIK3CDO00329 1044 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 TRAPPC10P48553 1259 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 TOB1P50616 345 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 MCTP2Q6DN12 878 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 RGMBQ6NW40 437 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 SAMD1Q6SPF0 538 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 KRT25Q7Z3Z0 450 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 REXO1Q8N1G1 1221 aaKnown RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 MB21D1Q8N884 522 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 USP28Q96RU2 1077 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 P2RX7Q99572 595 aaKnown RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 SCAND2PQ9GZW5 306 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 RTEL1Q9NZ71 1219 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 TFIP11Q9UBB9 837 aaKnown RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 CCDC39Q9UFE4 941 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 RCOR1Q9UKL0 485 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 ZNF214Q9UL59 606 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 CNPY2Q9Y2B0 182 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 MYH15Q9Y2K3 1946 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 TMEM88BA6NKF7 163 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 MEIS2O14770 477 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 ZNF157P51786 506 aaPredicted RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 GHRHRQ02643 423 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 UVSSAQ2YD98 709 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 POTEEQ6S8J3 1075 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 RASAL3Q86YV0 1011 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 BRI3BPQ8WY22 251 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 RAVER2Q9HCJ3 691 aaKnown RBP16.15■□□□□ 0.18
CLN3-242ENST00000635958 POLR3EQ9NVU0 708 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 CCPG1Q9ULG6 757 aa16.15■□□□□ 0.18
CLN3-242ENST00000635958 CCL15-CCL14A0A0B4J2E2 113 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 OSBPP22059 807 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 IRX3P78415 501 aaPredicted RBP16.14■□□□□ 0.17
CLN3-242ENST00000635958 TMEM132BQ14DG7 1078 aa16.14■□□□□ 0.17
CLN3-242ENST00000635958 CCL15Q16663 113 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms