RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CAP1Q01518 475 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 RTP5Q14D33 572 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 SPATS1Q496A3 300 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 ZNF326Q5BKZ1 582 aaKnown RBP5.35□□□□□ -1.55
SCN1A-208ENST00000625916 INTS3Q68E01 1043 aaKnown RBP5.35□□□□□ -1.55
SCN1A-208ENST00000625916 USP48Q86UV5 1035 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 KIAA0825Q8IV33 1275 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 BRF1Q92994 677 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 SPON2Q9BUD6 331 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 BCL2L13Q9BXK5 485 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 PDLIM7Q9NR12 457 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 HCFC2Q9Y5Z7 792 aa5.35□□□□□ -1.55
SCN1A-208ENST00000625916 FGF10O15520 208 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-208ENST00000625916 SRGAP3O43295 1099 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 ACRP10323 421 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 IMPDH2P12268 514 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 TACR1P25103 407 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 PRR5P85299 388 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 FOXO4P98177 505 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 UBXN11Q5T124 520 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 DCAF15Q66K64 600 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 ADGRG2Q8IZP9 1017 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 SMARCC1Q92922 1105 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-208ENST00000625916 FAM86C1Q9NVL1 165 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 PMF1-BGLAPU3KQ54 211 aa5.34□□□□□ -1.55
SCN1A-208ENST00000625916 A0A1B0GTL3 188 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 PRICKLE3O43900 615 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-208ENST00000625916 TBC1D8O95759 1140 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 TP53P04637 393 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-208ENST00000625916 ZNF445P59923 1031 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 NT5DC1Q5TFE4 455 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 FIBCD1Q8N539 461 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 FNIP1Q8TF40 1166 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 GIPC2Q8TF65 315 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 FERD3LQ96RJ6 166 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 SPATA25Q9BR10 227 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 SRRTQ9BXP5 876 aaKnown RBP5.33□□□□□ -1.56
SCN1A-208ENST00000625916 GP6Q9HCN6 339 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 ZNRF3Q9ULT6 936 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 FHOD1Q9Y613 1164 aa5.33□□□□□ -1.56
SCN1A-208ENST00000625916 PLA2G1BP04054 148 aaKnown RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 CD3EP07766 207 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 NCAM1P13591 858 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 ITGA4P13612 1032 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 ATF2P15336 505 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 FBLN1P23142 703 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 CORO7P57737 925 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 EFEMP1Q12805 493 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 MRPL58Q14197 206 aaKnown RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 ZXDCQ2QGD7 858 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 VWA3BQ502W6 1294 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 ANKRD39Q53RE8 183 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 AXDND1Q5T1B0 1012 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 FBXW10Q5XX13 1052 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 LIPIQ6XZB0 460 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 PPFIBP1Q86W92 1011 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 ALG3Q92685 438 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 PTCHD1Q96NR3 888 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 FCRL3Q96P31 734 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 RNF38Q9H0F5 515 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 NOL6Q9H6R4 1146 aaKnown RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 PLA2G2DQ9UNK4 145 aa5.32□□□□□ -1.56
SCN1A-208ENST00000625916 SF3B6Q9Y3B4 125 aaKnown RBP5.32□□□□□ -1.56
SCN1A-208ENST00000625916 K7ESM1 405 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 IFNGR1P15260 489 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 CD247P20963 164 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 L1CAMP32004 1257 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 POU4F1Q01851 419 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 ZFYVE27Q5T4F4 411 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 FERMT3Q86UX7 667 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 TAB3Q8N5C8 712 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-208ENST00000625916 ZNF526Q8TF50 670 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-208ENST00000625916 ZDHHC15Q96MV8 337 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 TM9SF2Q99805 663 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 KRTAP17-1Q9BYP8 105 aa5.31□□□□□ -1.56
SCN1A-208ENST00000625916 ASGR2P07307 311 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 INSRRP14616 1297 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 MC3RP41968 323 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 PPP2R5DQ14738 602 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 TCEAL1Q15170 157 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 SAPCD2Q86UD0 394 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 CABP7Q86V35 215 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 TMEM87AQ8NBN3 555 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 GPR20Q99678 358 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 GZF1Q9H116 711 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-208ENST00000625916 TMPRSS5Q9H3S3 457 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 PALD1Q9ULE6 856 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 ZNF451Q9Y4E5 1061 aa5.3□□□□□ -1.56
SCN1A-208ENST00000625916 GUCY2CP25092 1073 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 HTRA3P83110 453 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 ZYXQ15942 572 aaKnown RBP5.29□□□□□ -1.56
SCN1A-208ENST00000625916 ZNF827Q17R98 1081 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 HHIPL2Q6UWX4 724 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 UNC5AQ6ZN44 842 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 NLGN2Q8NFZ4 835 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 DDX1Q92499 740 aaKnown RBP5.29□□□□□ -1.56
SCN1A-208ENST00000625916 RNF34Q969K3 372 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 BCAS3Q9H6U6 928 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 RXFP1Q9HBX9 757 aa5.29□□□□□ -1.56
SCN1A-208ENST00000625916 SH3D21A4FU49 640 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms