RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ARHGAP31Q2M1Z3 1444 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CYP2E1P05181 493 aaPredicted RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 RANBP1P43487 201 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 ACTN3Q08043 901 aaPredicted RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 SYMPKQ92797 1274 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 OSBPL9Q96SU4 736 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 EYA1Q99502 592 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 ZNF518AQ6AHZ1 1483 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 COG1Q8WTW3 980 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 DTNBO60941 627 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 ARHGAP4P98171 946 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 TOGARAM2Q6ZUX3 1019 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 ZMYND12Q9H0C1 365 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 USP27XA6NNY8 438 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 RNMTO43148 476 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 N4BP1O75113 896 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 FNBP1Q96RU3 617 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 NUP153P49790 1475 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 B4DLN1 442 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 SPECC1L-ADORA2AF8WAN1 911 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 RASGRF2O14827 1237 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 TRIM66O15016 1216 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 TAF5LO75529 589 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 TRAPPC10P48553 1259 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 AKNAD1Q5T1N1 836 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 FMO2Q99518 471 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 USP44Q9H0E7 712 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 EIF2AQ9BY44 585 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 VPS54Q9P1Q0 977 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 EPS15L1Q9UBC2 864 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 LAD1O00515 517 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 CRCPO75575 148 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 MOCS3O95396 460 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 RAPGEF3O95398 923 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 PPP2R2AP63151 447 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 MAGOHBQ96A72 148 aaKnown RBP9.73□□□□□ -0.85
VCL-206ENST00000623461 HAUS8Q9BT25 410 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 DENND2AQ9ULE3 1009 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 MED23Q9ULK4 1368 aa9.73□□□□□ -0.85
VCL-206ENST00000623461 REREQ9P2R6 1566 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 STXBP3O00186 592 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 PLEKHF1Q96S99 279 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ELAC2Q9BQ52 826 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 HSPD1P10809 573 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 PHEXP78562 749 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 RPGRQ92834 1020 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 FGD4Q96M96 766 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 IRAK4Q9NWZ3 460 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ARHGEF10O15013 1369 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 MMEP08473 750 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 SMTNP53814 917 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ZNF654Q8IZM8 581 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 MYL10Q9BUA6 226 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 EPN3Q9H201 632 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ARMT1Q9H993 441 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 PDE6BP35913 854 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 MAN2A1Q16706 1144 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 SLC30A9Q6PML9 568 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 HINFPQ9BQA5 517 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 TMEM60Q9H2L4 133 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 RAB20Q9NX57 234 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ARMCX3Q9UH62 379 aaPredicted RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 PRDM4Q9UKN5 801 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 NFU1Q9UMS0 254 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 CD2APQ9Y5K6 639 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 FANCAO15360 1455 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 MAGI2Q86UL8 1455 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 KIF23Q02241 960 aaPredicted RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 PUM3Q15397 648 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 DZIP3Q86Y13 1208 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 RSAD2Q8WXG1 361 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 KIFC2Q96AC6 838 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 SERPING1P05155 500 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 ATP6V1G3Q96LB4 118 aa9.72□□□□□ -0.85
VCL-206ENST00000623461 SAMSN1Q9NSI8 373 aaKnown RBP9.72□□□□□ -0.85
VCL-206ENST00000623461 EIF3HO15372 352 aaKnown RBP eCLIP9.71□□□□□ -0.85
VCL-206ENST00000623461 UHMK1Q8TAS1 419 aaKnown RBP9.71□□□□□ -0.85
VCL-206ENST00000623461 P2RX5Q93086 422 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 PTCH1Q13635 1447 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.71□□□□□ -0.85
VCL-206ENST00000623461 SLC7A5Q01650 507 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 MYO1EQ12965 1108 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 CRYMQ14894 314 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 PLCB4Q15147 1175 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 NELFCDQ8IXH7 590 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 PLCH2O75038 1416 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 GRID2IPA4D2P6 1211 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 ADCY7P51828 1080 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 BLIDQ8IZY5 108 aa9.71□□□□□ -0.85
VCL-206ENST00000623461 ABCB4P21439 1286 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 GEN1Q17RS7 908 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 ZC3H18Q86VM9 953 aaKnown RBP9.71□□□□□ -0.86
VCL-206ENST00000623461 DHX40Q8IX18 779 aaKnown RBP9.71□□□□□ -0.86
VCL-206ENST00000623461 STAMBPL1Q96FJ0 436 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 KDRP35968 1356 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 PREX2Q70Z35 1606 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 ESRRAP11474 423 aaPredicted RBP9.71□□□□□ -0.86
VCL-206ENST00000623461 CNGA1P29973 690 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 PLTPP55058 493 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 DCUN1D2Q6PH85 259 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms