RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZNF543Q08ER8 600 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 TBX2Q13207 712 aaPredicted RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 DACT2Q5SW24 774 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 IGSF22Q8N9C0 903 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 PAXBP1Q9Y5B6 917 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 SLX4Q8IY92 1834 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 PES1O00541 588 aaKnown RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 EEF2P13639 858 aaKnown RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 ADCY7P51828 1080 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 PAK1Q13153 545 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 SEPT2Q15019 361 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 ZNF658Q5TYW1 1059 aaPredicted RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 CDKAL1Q5VV42 579 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 ADD3Q9UEY8 706 aaKnown RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 ZNF215Q9UL58 517 aaPredicted RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L15C9J2P7 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L13C9JLJ4 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L11C9JVI0 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L18D6R9N7 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L22D6RA61 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L17D6RBQ6 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L19D6RCP7 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L20D6RJB6 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 RXRBP28702 533 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 NT5C2P49902 561 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L24Q0WX57 530 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 KRT31Q15323 416 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 ASPRV1Q53RT3 343 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 ZNF772Q68DY9 489 aaPredicted RBP11.97□□□□□ -0.49
CUX1-221ENST00000622516 USP17L6PQ6QN14 398 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 KIF18AQ8NI77 898 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 ZDHHC15Q96MV8 337 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 DNAI1Q9UI46 699 aa11.97□□□□□ -0.49
CUX1-221ENST00000622516 MYH8P13535 1937 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 A0A0U1RQJ8 604 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 SOWAHDA6NJG2 315 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 N4BP3O15049 544 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 SNHG28P0DPA3 235 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 FCER1AP12319 257 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 JAG1P78504 1218 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 CERKLQ49MI3 558 aaPredicted RBP11.96□□□□□ -0.49
CUX1-221ENST00000622516 LRRN4CLQ8ND94 238 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 ATRIPQ8WXE1 791 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 NUDT12Q9BQG2 462 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 MMTAG2Q9BU76 263 aaKnown RBP11.96□□□□□ -0.49
CUX1-221ENST00000622516 SWAP70Q9UH65 585 aa11.96□□□□□ -0.49
CUX1-221ENST00000622516 SCAF8Q9UPN6 1271 aaKnown RBP11.96□□□□□ -0.49
CUX1-221ENST00000622516 RNF225M0QZC1 329 aaPredicted RBP11.96□□□□□ -0.5
CUX1-221ENST00000622516 FANCGO15287 622 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 KLRC4O43908 158 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 CASP14P31944 242 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 CALCRLQ16602 461 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 STRIP1Q5VSL9 837 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 SPICE1Q8N0Z3 855 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 FLAD1Q8NFF5 587 aa11.96□□□□□ -0.5
CUX1-221ENST00000622516 ZFP91Q96JP5 570 aaPredicted RBP11.96□□□□□ -0.5
CUX1-221ENST00000622516 PRMT6Q96LA8 375 aaPredicted RBP11.96□□□□□ -0.5
CUX1-221ENST00000622516 PSDA5PKW4 1024 aaPredicted RBP11.95□□□□□ -0.5
CUX1-221ENST00000622516 CTIFO43310 598 aaKnown RBP11.95□□□□□ -0.5
CUX1-221ENST00000622516 MYO1BO43795 1136 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 ERCC3P19447 782 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 SLC1A4P43007 532 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 NCBP1Q09161 790 aaKnown RBP11.95□□□□□ -0.5
CUX1-221ENST00000622516 STK4Q13043 487 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 TRIM34Q9BYJ4 488 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 CCSER1Q9C0I3 900 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 KBTBD4Q9NVX7 518 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 PNMA6FA0A0J9YX94 578 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 ASIC1P78348 528 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 DYMQ7RTS9 669 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 REXO1L1PQ8IX06 675 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 IRX2Q9BZI1 471 aaPredicted RBP11.95□□□□□ -0.5
CUX1-221ENST00000622516 RWDD2AQ9UIY3 292 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 PPP2R2CQ9Y2T4 447 aa11.95□□□□□ -0.5
CUX1-221ENST00000622516 CLRN2A0PK11 232 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 YDJCA8MPS7 323 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 KCNJ18B7U540 433 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 NKRFO15226 690 aaKnown RBP eCLIP11.94□□□□□ -0.56e-7■■■□□ 16.5
CUX1-221ENST00000622516 PPIP5K2O43314 1243 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 RAD17O75943 681 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 FXR1P51114 621 aaKnown RBP eCLIP11.94□□□□□ -0.5
CUX1-221ENST00000622516 KCNJ12Q14500 433 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 PPFIBP1Q86W92 1011 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 SIAH1Q8IUQ4 282 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 LRWD1Q9UFC0 647 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 FOCADQ5VW36 1801 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 AKR1B15C9JRZ8 316 aaPredicted RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 PDE4DQ08499 809 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 IKQ13123 557 aaPredicted RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 MCM6Q14566 821 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 USH1GQ495M9 461 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 TCP11X2Q5H9J9 407 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 IRF2BP1Q8IU81 584 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 PYM1Q9BRP8 204 aaKnown RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 SRRTQ9BXP5 876 aaKnown RBP11.94□□□□□ -0.5
CUX1-221ENST00000622516 PSTPIP2Q9H939 334 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 RMND1Q9NWS8 449 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 PI4KBQ9UBF8 816 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 PLIN4Q96Q06 1357 aa11.94□□□□□ -0.5
CUX1-221ENST00000622516 TCP10L2B9ZVM9 353 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms