RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RASGRF1Q13972 1273 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 LRRC41Q15345 812 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 KCTD16Q68DU8 428 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 SLFN12Q8IYM2 578 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 FAM71BQ8TC56 605 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 P2RX5Q93086 422 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 CAPS2Q9BXY5 557 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PCDHA4Q9UN74 947 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 ZDHHC9Q9Y397 364 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 SOWAHDA6NJG2 315 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PPIP5K2O43314 1243 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 ALDH1B1P30837 517 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 RAB3IL1Q8TBN0 382 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 DHTKD1Q96HY7 919 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PGBD1Q96JS3 809 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 CUEDC2Q9H467 287 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PIH1D3Q9NQM4 214 aaKnown RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 SPTLC3Q9NUV7 552 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 TBC1D8O95759 1140 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 ALAS1P13196 640 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 ARHGEF2Q92974 986 aaKnown RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 AZI2Q9H6S1 392 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 MAGEF1Q9HAY2 307 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 THRAP3Q9Y2W1 955 aaKnown RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 SRPRBQ9Y5M8 271 aaKnown RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 NR2F2P24468 414 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 FKBP3Q00688 224 aaKnown RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PPP2R5EQ16537 467 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 MCUR1Q96AQ8 359 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PPP1R12CQ9BZL4 782 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 VPS37BQ9H9H4 285 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 H7C1W4 665 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 TTLL11Q8NHH1 800 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 PLCB1Q9NQ66 1216 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 PARP2Q9UGN5 583 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 HEG1Q9ULI3 1381 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 PHLPP2Q6ZVD8 1323 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 CCDC151A5D8V7 595 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 TMEM232C9JQI7 657 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 STX2P32856 288 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 TBCKQ8TEA7 893 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 ST7Q9NRC1 585 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 HOMER3Q9NSC5 361 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 K7ENM7 598 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 SNAP23O00161 211 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 LAD1O00515 517 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 PPP2R5DQ14738 602 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 PLA2G4DQ86XP0 818 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 AK8Q96MA6 479 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 WDR17Q8IZU2 1322 aa15.38■□□□□ 0.05
CPSF1-212ENST00000616140 CYP27A1Q02318 531 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 ZNF658Q5TYW1 1059 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 CCDC110Q8TBZ0 833 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 MAIP1Q8WWC4 291 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.37■□□□□ 0.053e-7■■□□□ 13.9
CPSF1-212ENST00000616140 SEMA3EO15041 775 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 XKR9Q5GH70 373 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 ODR4Q5SWX8 454 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 FAM102BQ5T8I3 360 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 MCTP2Q6DN12 878 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 CACNA2D3Q8IZS8 1091 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 STRBPQ96SI9 672 aaKnown RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 CAPN7Q9Y6W3 813 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 BUB1BO60566 1050 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 RNF40O75150 1001 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 DLATP10515 647 aaKnown RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 MCAMP43121 646 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 LIG3P49916 1009 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 KCNQ4P56696 695 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 RETREG2Q8NC44 543 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 KRT12Q99456 494 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 NLRP1Q9C000 1473 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 GOLGA8KD6RF30 607 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 POLR2MP0CAP2 368 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 CACNB1Q02641 598 aaPredicted RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 GPATCH4Q5T3I0 446 aaKnown RBP15.37■□□□□ 0.05
CPSF1-212ENST00000616140 ANKRD20A3Q5VUR7 823 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 CTAGE3PQ8IX95 158 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 GOLGA5Q8TBA6 731 aa15.37■□□□□ 0.05
CPSF1-212ENST00000616140 DAPK3O43293 454 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 CXCR5P32302 372 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 CASC4Q6P4E1 433 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 CCDC89Q8N998 374 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 SMCR8Q8TEV9 937 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-212ENST00000616140 GLG1Q92896 1179 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 AMNQ9BXJ7 453 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 PARD6BQ9BYG5 372 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 CLCN6P51797 869 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 ITIH3Q06033 890 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 MAN2A1Q16706 1144 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 ARMCX5Q6P1M9 558 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 SPICE1Q8N0Z3 855 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 SMC1BQ8NDV3 1235 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 DEPTORQ8TB45 409 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 STK32BQ9NY57 414 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 USP21Q9UK80 565 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 RABGAP1Q9Y3P9 1069 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 CIB2O75838 187 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 USP17L8P0C7I0 530 aa15.36■□□□□ 0.05
CPSF1-212ENST00000616140 GKAP1Q5VSY0 366 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms