RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 AGPAT5Q9NUQ2 364 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 LGALS16A8MUM7 142 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 LIG3P49916 1009 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 NOX5Q96PH1 765 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 MKRN1Q9UHC7 482 aaKnown RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 LTN1O94822 1766 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 RSRC2Q7L4I2 434 aaKnown RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 ANKRD2Q9GZV1 360 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 XDHP47989 1333 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 PNPLA7Q6ZV29 1317 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 EIF4A3P38919 411 aaKnown RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 DCAF17Q5H9S7 520 aaPredicted RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 USP17L2Q6R6M4 530 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 ADGRA1Q86SQ6 560 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 CELF1Q92879 486 aaKnown RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 KIFC2Q96AC6 838 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 ZNF512BQ96KM6 892 aaPredicted RBP13.94□□□□□ -0.18
MSH6-213ENST00000614496 NFAT5O94916 1531 aa13.94□□□□□ -0.18
MSH6-213ENST00000614496 GNPATO15228 680 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 ERLIN2O94905 339 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 KLK7P49862 253 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 PFKFB3Q16875 520 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 OTUD6BQ8N6M0 293 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 EYA3Q99504 573 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 MLXIPQ9HAP2 919 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 DCP1AQ9NPI6 582 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 WTIPA6NIX2 430 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 ABL1P00519 1130 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 SARSP49591 514 aaKnown RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 HERC4Q5GLZ8 1057 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 NEK8Q86SG6 692 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 VPS36Q86VN1 386 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 RPGRIP1Q96KN7 1286 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 ATP8A2Q9NTI2 1148 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 LIMA1Q9UHB6 759 aaKnown RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 ZBED6P86452 979 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 IPO4Q8TEX9 1081 aaKnown RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 POLD4Q9HCU8 107 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 SAMM50Q9Y512 469 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 FCER1AP12319 257 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 CCNE1P24864 410 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 CACNB1Q02641 598 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 SLC9C1Q4G0N8 1177 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 BEND6Q5SZJ8 279 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 TMEM139Q8IV31 216 aa13.93□□□□□ -0.18
MSH6-213ENST00000614496 GPR101Q96P66 508 aaPredicted RBP13.93□□□□□ -0.18
MSH6-213ENST00000614496 RFC4P35249 363 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 GGCXP38435 758 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 CCDC84Q86UT8 332 aaPredicted RBP13.92□□□□□ -0.18
MSH6-213ENST00000614496 BRIP1Q9BX63 1249 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 ANKZF1Q9H8Y5 726 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 HYOU1Q9Y4L1 999 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 USP8P40818 1118 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 CERS3Q8IU89 383 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 LRRC47Q8N1G4 583 aaKnown RBP13.92□□□□□ -0.18
MSH6-213ENST00000614496 TBCKQ8TEA7 893 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 DHTKD1Q96HY7 919 aaPredicted RBP13.92□□□□□ -0.18
MSH6-213ENST00000614496 TRIM31Q9BZY9 425 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 SMIM23A6NLE4 172 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 RIMBP2O15034 1052 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 ZFYVE27Q5T4F4 411 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 SELENOOQ9BVL4 669 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 LSM14BQ9BX40 385 aaKnown RBP13.92□□□□□ -0.18
MSH6-213ENST00000614496 LRRC27Q9C0I9 530 aa13.92□□□□□ -0.18
MSH6-213ENST00000614496 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.92□□□□□ -0.18
MSH6-213ENST00000614496 CEP104O60308 925 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 USP14P54578 494 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 POLR2FP61218 127 aaKnown RBP13.91□□□□□ -0.18
MSH6-213ENST00000614496 GUCY2DQ02846 1103 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 KLHL30Q0D2K2 578 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 TROAPQ12815 778 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 TXNRD1Q16881 649 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 ZNF804AQ7Z570 1209 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 NALCNQ8IZF0 1738 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 CAPS2Q9BXY5 557 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 THAP9Q9H5L6 903 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 SMARCAL1Q9NZC9 954 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 TCEAL9Q9UHQ7 104 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 MINPP1Q9UNW1 487 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 WNT7AO00755 349 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 NCK2O43639 380 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 PKN1Q16512 942 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 CFAP221Q4G0U5 840 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 ARL6IP4Q66PJ3 421 aaKnown RBP13.91□□□□□ -0.18
MSH6-213ENST00000614496 TMEM60Q9H2L4 133 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 FTCDO95954 541 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 EHHADHQ08426 723 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 PPFIA1Q13136 1202 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 SFMBT2Q5VUG0 894 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 IFT20Q8IY31 132 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 ZNF34Q8IZ26 560 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 COA7Q96BR5 231 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 FAM84BQ96KN1 310 aaPredicted RBP13.91□□□□□ -0.18
MSH6-213ENST00000614496 DUSP10Q9Y6W6 482 aa13.91□□□□□ -0.18
MSH6-213ENST00000614496 GOLGA6L7A0A1B0GV03 622 aa13.9□□□□□ -0.18
MSH6-213ENST00000614496 VEGFAP15692 232 aaPredicted RBP13.9□□□□□ -0.18
MSH6-213ENST00000614496 KIF11P52732 1056 aa13.9□□□□□ -0.18
MSH6-213ENST00000614496 UBLCP1Q8WVY7 318 aaPredicted RBP13.9□□□□□ -0.18
MSH6-213ENST00000614496 PPM1EQ8WY54 764 aa13.9□□□□□ -0.18
MSH6-213ENST00000614496 PIGSQ96S52 555 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms