RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 SETDB2Q96T68 719 aa9.77□□□□□ -0.84
COMMD3-215ENST00000602574 NAA15Q9BXJ9 866 aaKnown RBP9.77□□□□□ -0.84
COMMD3-215ENST00000602574 NDST4Q9H3R1 872 aa9.77□□□□□ -0.84
COMMD3-215ENST00000602574 CLSTN2Q9H4D0 955 aa9.77□□□□□ -0.84
COMMD3-215ENST00000602574 RHBDL2Q9NX52 303 aa9.77□□□□□ -0.84
COMMD3-215ENST00000602574 COMMD3-BMI1R4GMX3 469 aa9.77□□□□□ -0.84
COMMD3-215ENST00000602574 ATP10BO94823 1461 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 BTBD19C9JJ37 291 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 POLE2P56282 527 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 VSNL1P62760 191 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 LSAMPQ13449 338 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 LRP8Q14114 963 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 NXNQ6DKJ4 435 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 ANO7Q6IWH7 933 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 DZIP1LQ8IYY4 767 aaKnown RBP9.77□□□□□ -0.85
COMMD3-215ENST00000602574 RUBCNQ92622 972 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 PTPRN2Q92932 1015 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 RNF25Q96BH1 459 aaPredicted RBP9.77□□□□□ -0.85
COMMD3-215ENST00000602574 LNPKQ9C0E8 428 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 DRC3Q9H069 523 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 TCF7L2Q9NQB0 619 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 ATP8A2Q9NTI2 1148 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 ATAD3AQ9NVI7 634 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 SATB2Q9UPW6 733 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 LRRC42Q9Y546 428 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 HECW2Q9P2P5 1572 aa9.77□□□□□ -0.85
COMMD3-215ENST00000602574 VWA3AA6NCI4 1184 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 WFS1O76024 890 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 UBL4AP11441 157 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ZNF131P52739 623 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 FOSBP53539 338 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 FAM160A1Q05DH4 1040 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 PDCD4Q53EL6 469 aaKnown RBP9.76□□□□□ -0.85
COMMD3-215ENST00000602574 SPECC1Q5M775 1068 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 NCAPH2Q6IBW4 605 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 KRT77Q7Z794 578 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TRIM50Q86XT4 487 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 DPF3Q92784 378 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 GFM2Q969S9 779 aaKnown RBP9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TIPINQ9BVW5 301 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 STK39Q9UEW8 545 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 BAIAP2L1Q9UHR4 511 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 CDC23Q9UJX2 597 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 DMRT2Q9Y5R5 561 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ADGRL3Q9HAR2 1447 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TEX28O15482 410 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TSPAN1O60635 241 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 EIF2S1P05198 315 aaKnown RBP9.76□□□□□ -0.85
COMMD3-215ENST00000602574 NFKBIAP25963 317 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 KIF11P52732 1056 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 BASP1P80723 227 aaKnown RBP9.76□□□□□ -0.85
COMMD3-215ENST00000602574 CYP4A11Q02928 519 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 SEPT6Q14141 434 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ANKRD20A2Q5SQ80 823 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ANKRD20A1Q5TYW2 823 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ANKRD20A3Q5VUR7 823 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 OR52E8Q6IFG1 317 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 KDM7AQ6ZMT4 941 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 SNF8Q96H20 258 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TUBGCP5Q96RT8 1024 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 TCF12Q99081 682 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 CARD9Q9H257 536 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 STIM2Q9P246 746 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 MTUS1Q9ULD2 1270 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 FAM32AQ9Y421 112 aaKnown RBP9.76□□□□□ -0.85
COMMD3-215ENST00000602574 USP16Q9Y5T5 823 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ERVK-7P63135 1459 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 ZNF518AQ6AHZ1 1483 aa9.76□□□□□ -0.85
COMMD3-215ENST00000602574 MED14O60244 1454 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 LINC00854A0A1B0GVQ3 168 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 DIAPH1O60610 1272 aaKnown RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 ACADSBP45954 432 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 RAB15P59190 212 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 RASSF7Q02833 373 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 ZNF362Q5T0B9 420 aaPredicted RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 GKAP1Q5VSY0 366 aaPredicted RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 DAB2IPQ5VWQ8 1189 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 IRGCQ6NXR0 463 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 ARMCX5Q6P1M9 558 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 FAM186BQ8IYM0 893 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 EHBP1Q8NDI1 1231 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 USP6NLQ92738 828 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 MUC3BQ9H195 1237 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 ZNF777Q9ULD5 760 aaPredicted RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 CCPG1Q9ULG6 757 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 KIF1BO60333 1816 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 SPTLC2O15270 562 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 F13A1P00488 732 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 SSBP05455 408 aaKnown RBP eCLIP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 PIP4K2BP78356 416 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 TAF11Q15544 211 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 PTGISQ16647 500 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 CRACR2BQ8N4Y2 399 aaPredicted RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 PDCD7Q8N8D1 485 aaKnown RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 LILRB1Q8NHL6 650 aaPredicted RBP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 MYCBPAPQ8TBZ2 947 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.75□□□□□ -0.85
COMMD3-215ENST00000602574 CASP10Q92851 521 aa9.75□□□□□ -0.85
COMMD3-215ENST00000602574 C8orf48Q96LL4 319 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms