RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	NPY5R	Q15761	445 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	QRICH1	Q2TAL8	776 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	TYW1B	Q6NUM6	668 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	PPP1R18	Q6NYC8	613 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	BLID	Q8IZY5	108 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	OXER1	Q8TDS5	423 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	BPIFA3	Q9BQP9	254 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ZMYND12	Q9H0C1	365 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	PDCL3	Q9H2J4	239 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	C6orf50	Q9HD87	102 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ATAD5	Q96QE3	1844 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ESYT2	A0FGR8	921 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	UNCX	A6NJT0	531 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	GOLGA6L19	H0YKK7	550 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	TRAF5	O00463	557 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	VCAM1	P19320	739 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	PPAT	Q06203	517 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	TRAF1	Q13077	416 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	ERO1B	Q86YB8	467 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	DAGLB	Q8NCG7	672 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	MYRIP	Q8NFW9	859 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	KIFC2	Q96AC6	838 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	C12orf42	Q96LP6	360 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	TMOD4	Q9NZQ9	345 aa		13.32	□□□□□ -0.28
VRK3-223	ENST00000601341	MYH6	P13533	1939 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	UQCRHL	A0A096LP55	91 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	SMCO2	A6NFE2	343 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	PPP1R11	O60927	126 aa	Predicted RBP	13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	UQCRH	P07919	91 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	HMGCS2	P54868	508 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	FKBP1B	P68106	108 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	PLCB2	Q00722	1185 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	TPRN	Q4KMQ1	711 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	RILPL1	Q5EBL4	403 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	LDLRAD1	Q5T700	205 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	MOB2	Q70IA6	237 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	CEP57L1	Q8IYX8	460 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	FSIP1	Q8NA03	581 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	PRPF38A	Q8NAV1	312 aa	Known RBP	13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	COA7	Q96BR5	231 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	TIGD1	Q96MW7	591 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	AMN	Q9BXJ7	453 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	TRIM5	Q9C035	493 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	TANGO6	Q9C0B7	1094 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	DNAJC25	Q9H1X3	360 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	PCDHA7	Q9UN72	937 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	PCDHA1	Q9Y5I3	950 aa		13.31	□□□□□ -0.28
VRK3-223	ENST00000601341	SPDYE5	A6NIY4	337 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	SPTLC2	O15270	562 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	CMA1	P23946	247 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	STK38	Q15208	465 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	SH3D19	Q5HYK7	790 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	FBXO11	Q86XK2	927 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	JMY	Q8N9B5	988 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	TNFRSF25	Q93038	417 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	CLMN	Q96JQ2	1002 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	SLF1	Q9BQI6	1058 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	GLT8D2	Q9H1C3	349 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	KCNF1	Q9H3M0	494 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	GOLPH3L	Q9H4A5	285 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	ZNF408	Q9H9D4	720 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	ELP3	Q9H9T3	547 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	FAM237A	A0A1B0GTK4	181 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	PPP6R2	O75170	966 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	FLOT1	O75955	427 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	ADCY7	P51828	1080 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	CEBPZ	Q03701	1054 aa	Known RBP	13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	DGKZ	Q13574	1117 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	RANBP17	Q9H2T7	1088 aa	Known RBP	13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	FBXO28	Q9NVF7	368 aa		13.3	□□□□□ -0.28
VRK3-223	ENST00000601341	CXCL11	O14625	94 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	FDX1	P10109	184 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	MRPL12	P52815	198 aa	Known RBP	13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	SNAP25	P60880	206 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	SLC39A14	Q15043	492 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	SF3A1	Q15459	793 aa	Known RBP	13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	ANO1	Q5XXA6	986 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	CHADL	Q6NUI6	762 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	CUL5	Q93034	780 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	OTUD5	Q96G74	571 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	PSTPIP2	Q9H939	334 aa		13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.29	□□□□□ -0.28
VRK3-223	ENST00000601341	CCDC194	A0A1B0GVG4	234 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341		M0R2N6	131 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	TRAPPC10	P48553	1259 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	FMR1	Q06787	632 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	PPIL2	Q13356	520 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	REXO1	Q8N1G1	1221 aa	Known RBP	13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	C2orf69	Q8N8R5	385 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	CNKSR2	Q8WXI2	1034 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	SLC10A4	Q96EP9	437 aa		13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	ZNF830	Q96NB3	372 aa	Predicted RBP	13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	GBA2	Q9HCG7	927 aa	Predicted RBP	13.28	□□□□□ -0.28
VRK3-223	ENST00000601341	RIC8A	Q9NPQ8	531 aa		13.28	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms