RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SNX17Q15036 470 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 LRRC41Q15345 812 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 SEC23AQ15436 765 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 CCDC85BQ15834 202 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-214ENST00000600840 RNF20Q5VTR2 975 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 SNRNP48Q6IEG0 339 aaKnown RBP10.27□□□□□ -0.77
TRIM28-214ENST00000600840 CPXCR1Q8N123 301 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 NCOA7Q8NI08 942 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 ATXN2LQ8WWM7 1075 aaKnown RBP10.27□□□□□ -0.77
TRIM28-214ENST00000600840 FGD4Q96M96 766 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 NEK1Q96PY6 1258 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 MTA3Q9BTC8 594 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 AGXT2Q9BYV1 514 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 PRDM12Q9H4Q4 367 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 CNNM2Q9H8M5 875 aa10.27□□□□□ -0.77
TRIM28-214ENST00000600840 LAMA2P24043 3122 aaKnown RBP10.27□□□□□ -0.77
TRIM28-214ENST00000600840 GBF1Q92538 1859 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 DNAJC25-GNG10A0A024R161 153 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 KBTBD13C9JR72 458 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 SNAI1O95863 264 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-214ENST00000600840 PGK1P00558 417 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 CPA1P15085 419 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 PBX2P40425 430 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 ADCYAP1R1P41586 468 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 SNAP25P60880 206 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 TLE2Q04725 743 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 KRT32Q14532 448 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 SLFN13Q68D06 897 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 PRPF38AQ8NAV1 312 aaKnown RBP10.26□□□□□ -0.77
TRIM28-214ENST00000600840 ESR2Q92731 530 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 KIFC2Q96AC6 838 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 TTC14Q96N46 770 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 TINF2Q9BSI4 451 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 KRT23Q9C075 422 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 ZNF287Q9HBT7 754 aa10.26□□□□□ -0.77
TRIM28-214ENST00000600840 GPHNQ9NQX3 736 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-214ENST00000600840 DDX49Q9Y6V7 483 aaKnown RBP10.26□□□□□ -0.77
TRIM28-214ENST00000600840 MUC3AQ02505 3323 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-214ENST00000600840 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-214ENST00000600840 GRXCR1A8MXD5 290 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ATP2A1O14983 1001 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ADCY6O43306 1168 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 TTLL1O95922 423 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 TSPY3P0CV98 308 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 TSPY8P0CW00 308 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 MCCP23508 829 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 EVCP57679 992 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ADGRE1Q14246 886 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 KCTD2Q14681 263 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 DHX32Q7L7V1 743 aaKnown RBP10.25□□□□□ -0.77
TRIM28-214ENST00000600840 DGKHQ86XP1 1220 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ARRDC4Q8NCT1 418 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 GMCL1P1Q8NEA9 526 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 TIFAQ96CG3 184 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 TEX13BQ9BXU2 312 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ALDH8A1Q9H2A2 487 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-214ENST00000600840 SLC38A10Q9HBR0 1119 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 SENP2Q9HC62 589 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 SLC5A4Q9NY91 659 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 DIS3Q9Y2L1 958 aaKnown RBP10.25□□□□□ -0.77
TRIM28-214ENST00000600840 ZNF536O15090 1300 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 WDR19Q8NEZ3 1342 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 LCTP09848 1927 aa10.25□□□□□ -0.77
TRIM28-214ENST00000600840 MYADML2A6NDP7 307 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 TSPY2A6NKD2 308 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 TMEM232C9JQI7 657 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 RANBP6O60518 1105 aaKnown RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 ZBED4O75132 1171 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 BMP3P12645 472 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 PTGS1P23219 599 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 RPS6KB1P23443 525 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 MRPS5P82675 430 aaKnown RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 CNTN2Q02246 1040 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 RRP12Q5JTH9 1297 aaKnown RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 KCTD1Q719H9 257 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 RUFY3Q7L099 469 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 CHST3Q7LGC8 479 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 ENAHQ8N8S7 591 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 AGBL1Q96MI9 1066 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 JAKMIP1Q96N16 626 aaKnown RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 ZSCAN10Q96SZ4 725 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 GAS2L1Q99501 681 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-214ENST00000600840 XPNPEP3Q9NQH7 507 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 FEM1BQ9UK73 627 aa10.24□□□□□ -0.77
TRIM28-214ENST00000600840 SH2B2O14492 632 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 PRC1O43663 620 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 ADAMTS4O75173 837 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 HMGB1P09429 215 aaKnown RBP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 CLTBP09497 229 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 RAG1P15918 1043 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 PSMA5P28066 241 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 MCM5P33992 734 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 LIFRP42702 1097 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 FPGSQ05932 587 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 TOB2Q14106 344 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 TTBK2Q6IQ55 1244 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 MAMDC4Q6UXC1 1216 aa10.23□□□□□ -0.77
TRIM28-214ENST00000600840 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.23□□□□□ -0.77
TRIM28-214ENST00000600840 DDX11Q96FC9 970 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms