RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CNTN2Q02246 1040 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 QRICH1Q2TAL8 776 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 USH1GQ495M9 461 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 DHX32Q7L7V1 743 aaKnown RBP16.13■□□□□ 0.17
UPF1-205ENST00000598209 ZNF467Q7Z7K2 595 aaPredicted RBP16.13■□□□□ 0.17
UPF1-205ENST00000598209 MSL3Q8N5Y2 521 aaKnown RBP16.13■□□□□ 0.17
UPF1-205ENST00000598209 FAM133AQ8N9E0 248 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 TCEANC2Q96MN5 208 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 CYP39A1Q9NYL5 469 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 SNX14Q9Y5W7 946 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 FARP2O94887 1054 aaPredicted RBP16.12■□□□□ 0.17
UPF1-205ENST00000598209 HMGB1P09429 215 aaKnown RBP16.12■□□□□ 0.17
UPF1-205ENST00000598209 SLC35G1Q2M3R5 365 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 LHX8Q68G74 356 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 MAMDC4Q6UXC1 1216 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 CTCFLQ8NI51 663 aaPredicted RBP16.12■□□□□ 0.17
UPF1-205ENST00000598209 CLEC4DQ8WXI8 215 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 MTMR8Q96EF0 704 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 JAKMIP1Q96N16 626 aaKnown RBP16.12■□□□□ 0.17
UPF1-205ENST00000598209 MAP3K14Q99558 947 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 DDX20Q9UHI6 824 aaKnown RBP16.12■□□□□ 0.17
UPF1-205ENST00000598209 NRBP1Q9UHY1 535 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 OGDHLQ9ULD0 1010 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 SYNGAP1Q96PV0 1343 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 PDE4DIPQ5VU43 2346 aa16.12■□□□□ 0.17
UPF1-205ENST00000598209 LRRC37A2A6NM11 1700 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 PTPDC1A2A3K4 754 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 SOWAHBA6NEL2 793 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 SEPT4O43236 478 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 MSCO60682 206 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 SNAI1O95863 264 aaPredicted RBP16.11■□□□□ 0.17
UPF1-205ENST00000598209 KIF5BP33176 963 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 BAATQ14032 418 aaPredicted RBP16.11■□□□□ 0.17
UPF1-205ENST00000598209 UBE2Q1Q7Z7E8 422 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 SGMS1Q86VZ5 419 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 FBXO11Q86XK2 927 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 USP26Q9BXU7 913 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 RIOX1Q9H6W3 641 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 CNPY2Q9Y2B0 182 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 SLC12A7Q9Y666 1083 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 ABCB11O95342 1321 aa16.11■□□□□ 0.17
UPF1-205ENST00000598209 ZBTB5O15062 677 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CYTH3O43739 400 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CALM1P0DP23 149 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CALM2P0DP24 149 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CALM3P0DP25 149 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CPA1P15085 419 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 RXRAP19793 462 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 RNF207Q6ZRF8 634 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 ARMCX2Q7L311 632 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 HOMER1Q86YM7 354 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 ANKLE1Q8NAG6 615 aa16.1■□□□□ 0.17
UPF1-205ENST00000598209 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.1■□□□□ 0.17
UPF1-205ENST00000598209 TNRC18O15417 2968 aaPredicted RBP16.1■□□□□ 0.17
UPF1-205ENST00000598209 MKI67P46013 3256 aaKnown RBP16.09■□□□□ 0.17
UPF1-205ENST00000598209 ZNF865P0CJ78 1059 aaPredicted RBP16.09■□□□□ 0.17
UPF1-205ENST00000598209 CALML3P27482 149 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 GNAQP50148 359 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 ANO1Q5XXA6 986 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 BLOC1S2Q6QNY1 142 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 SLC30A10Q6XR72 485 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 SYNE3Q6ZMZ3 975 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 RAB11FIP4Q86YS3 637 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 CCDC144CPQ8IYA2 1237 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 DIS3LQ8TF46 1054 aaKnown RBP16.09■□□□□ 0.17
UPF1-205ENST00000598209 PURBQ96QR8 312 aaKnown RBP16.09■□□□□ 0.17
UPF1-205ENST00000598209 PIGSQ96S52 555 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 AMNQ9BXJ7 453 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 MRPL11Q9Y3B7 192 aaKnown RBP16.09■□□□□ 0.17
UPF1-205ENST00000598209 ASTN1O14525 1302 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 ALPK3Q96L96 1907 aa16.09■□□□□ 0.17
UPF1-205ENST00000598209 ASB14A6NK59 587 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 PPP1R11O60927 126 aaPredicted RBP16.08■□□□□ 0.16
UPF1-205ENST00000598209 PSMA5P28066 241 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 MNX1P50219 401 aaPredicted RBP16.08■□□□□ 0.16
UPF1-205ENST00000598209 RPS6P62753 249 aaKnown RBP16.08■□□□□ 0.16
UPF1-205ENST00000598209 APOA5Q6Q788 366 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 MICU3Q86XE3 530 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 RGS22Q8NE09 1264 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 PAWRQ96IZ0 340 aaKnown RBP16.08■□□□□ 0.16
UPF1-205ENST00000598209 LZTS2Q9BRK4 669 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 SPZ1Q9BXG8 430 aa16.08■□□□□ 0.16
UPF1-205ENST00000598209 ZHX1Q9UKY1 873 aaPredicted RBP16.08■□□□□ 0.16
UPF1-205ENST00000598209 PLEKHA8P1O95397 391 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 AKR1A1P14550 325 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 CASTP20810 708 aaKnown RBP16.07■□□□□ 0.16
UPF1-205ENST00000598209 RPS6KB1P23443 525 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 SMARCA1P28370 1054 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 ALDH5A1P51649 535 aaPredicted RBP16.07■□□□□ 0.16
UPF1-205ENST00000598209 FGD1P98174 961 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 ACVR2BQ13705 512 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 Q6ZUG5 572 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 NECAB2Q7Z6G3 386 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 MCF2L2Q86YR7 1114 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 FANCBQ8NB91 859 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 PIBF1Q8WXW3 757 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 TBC1D5Q92609 795 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 ABHD16BQ9H3Z7 469 aa16.07■□□□□ 0.16
UPF1-205ENST00000598209 ADD3Q9UEY8 706 aaKnown RBP16.07■□□□□ 0.16
UPF1-205ENST00000598209 BRPF3Q9ULD4 1205 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms