RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 TDP2O95551 362 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 ATP1A1P05023 1023 aaKnown RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 GUCY2FP51841 1108 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 RASSF7Q02833 373 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 ZSCAN26Q16670 478 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 UTP14CQ5TAP6 766 aaKnown RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 HDXQ7Z353 690 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 KLHL7Q8IXQ5 586 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 TRIM31Q9BZY9 425 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 ARPP21Q9UBL0 812 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 SCAF8Q9UPN6 1271 aaKnown RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 SAR1BQ9Y6B6 198 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 RGPD5Q99666 1765 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 OR52Z1P0C646 297 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 MDM2Q00987 491 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 AMPD3Q01432 767 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 SHISA4Q96DD7 197 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 IFIH1Q9BYX4 1025 aaKnown RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 ANKRD2Q9GZV1 360 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 PACSIN2Q9UNF0 486 aaPredicted RBP13.84□□□□□ -0.19
USHBP1-207ENST00000597928 TOPAZ1Q8N9V7 1692 aa13.84□□□□□ -0.19
USHBP1-207ENST00000597928 A0A1B0GTH6 734 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 PAFAH1B1P43034 410 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 MAGEA1P43355 309 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 GNAQP50148 359 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 APBA1Q02410 837 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 PFKFB3Q16875 520 aaPredicted RBP13.83□□□□□ -0.19
USHBP1-207ENST00000597928 ZNF658Q5TYW1 1059 aaPredicted RBP13.83□□□□□ -0.19
USHBP1-207ENST00000597928 CEP95Q96GE4 821 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 SPAG5Q96R06 1193 aa13.83□□□□□ -0.19
USHBP1-207ENST00000597928 SFI1A8K8P3 1242 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ODF2Q5BJF6 829 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 TTBK2Q6IQ55 1244 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ARHGEF1Q92888 912 aaKnown RBP13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ZC3H12CQ9C0D7 883 aaKnown RBP13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ZNF287Q9HBT7 754 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 STK36Q9NRP7 1315 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 SMIM23A6NLE4 172 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 DDAH1O94760 285 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 GNA11P29992 359 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ATP1A2P50993 1020 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 TSG101Q99816 390 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 NYXQ9GZU5 481 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ATP8A2Q9NTI2 1148 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 CNTNAP5Q8WYK1 1306 aa13.83□□□□□ -0.2
USHBP1-207ENST00000597928 ESYT3A0FGR9 886 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L15C9J2P7 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L13C9JLJ4 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L11C9JVI0 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L18D6R9N7 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L22D6RA61 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L17D6RBQ6 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L19D6RCP7 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L20D6RJB6 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 CDK8P49336 464 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 MAP3K9P80192 1104 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 ATP2C1P98194 919 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L24Q0WX57 530 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 ANKRD40Q6AI12 368 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 USP17L6PQ6QN14 398 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 KSR1Q8IVT5 923 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 RABGGTAQ92696 567 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 L2HGDHQ9H9P8 463 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 NPHP3-ACAD11A0A0J9YXS1 232 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 DDX39AO00148 427 aaKnown RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 IL17AQ16552 155 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 MAATS1Q7Z4T9 603 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 NEK8Q86SG6 692 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 MB21D1Q8N884 522 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 TSPYL1Q9H0U9 437 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 ADAM21Q9UKJ8 722 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 COL5A2P05997 1499 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 PNPLA7Q6ZV29 1317 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 FTCDO95954 541 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 KRT83P78385 493 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 SECISBP2LQ93073 1101 aaKnown RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 NHEJ1Q9H9Q4 299 aaPredicted RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 CWC15Q9P013 229 aaKnown RBP13.82□□□□□ -0.2
USHBP1-207ENST00000597928 GGA1Q9UJY5 639 aa13.82□□□□□ -0.2
USHBP1-207ENST00000597928 WDR19Q8NEZ3 1342 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 TACC1O75410 805 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 WDR66Q8TBY9 1149 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 CCDC43Q96MW1 224 aaKnown RBP13.81□□□□□ -0.2
USHBP1-207ENST00000597928 MMS19Q96T76 1030 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 GOLPH3Q9H4A6 298 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 MED1Q15648 1581 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-207ENST00000597928 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.81□□□□□ -0.2
USHBP1-207ENST00000597928 H0YHG0 523 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 H7C1D1 291 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 TBC1D8O95759 1140 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 ZNF18P17022 549 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 POLR2FP61218 127 aaKnown RBP13.81□□□□□ -0.2
USHBP1-207ENST00000597928 NAA35Q5VZE5 725 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 USP40Q9NVE5 1235 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 KIAA1024Q9UPX6 916 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 EIF4A3P38919 411 aaKnown RBP13.81□□□□□ -0.2
USHBP1-207ENST00000597928 BRIP1Q9BX63 1249 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 DBNDD1Q9H9R9 158 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 GOPCQ9HD26 462 aa13.81□□□□□ -0.2
USHBP1-207ENST00000597928 RWDD2AQ9UIY3 292 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms