RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TNFAIP2	Q03169	654 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	HDAC1	Q13547	482 aa	Predicted RBP	12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	ALX1	Q15699	326 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	TKFC	Q3LXA3	575 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	PCSK9	Q8NBP7	692 aa	Known RBP	12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	HELLS	Q9NRZ9	838 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	CYP39A1	Q9NYL5	469 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	CCPG1	Q9ULG6	757 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	MROH7	Q68CQ1	1323 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.44	□□□□□ -0.42
LSM4-205	ENST00000597776		A0A0U1RQG5	324 aa	Predicted RBP	12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	ASB14	A6NK59	587 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	ARVCF	O00192	962 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	TIMP1	P01033	207 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	FGR	P09769	529 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	HAND2	P61296	217 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	NMI	Q13287	307 aa	Predicted RBP	12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	MCMDC2	Q4G0Z9	681 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	TMEM63B	Q5T3F8	832 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	CXCL17	Q6UXB2	119 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	NSMF	Q6X4W1	530 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	EEPD1	Q7L9B9	569 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	TLK2	Q86UE8	772 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	FBXO16	Q8IX29	292 aa	Predicted RBP	12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	DCAF4	Q8WV16	495 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	MYLIP	Q8WY64	445 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	LNPK	Q9C0E8	428 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	GPCPD1	Q9NPB8	672 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	PDGFC	Q9NRA1	345 aa		12.44	□□□□□ -0.42
LSM4-205	ENST00000597776	VCAN	P13611	3396 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	LCT	P09848	1927 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	CUL9	Q8IWT3	2517 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	ICAM1	P05362	532 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	HSPD1	P10809	573 aa	Known RBP	12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	SMPD1	P17405	629 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	NKX3-2	P78367	333 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	SYDE2	Q5VT97	1194 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	FAM126B	Q8IXS8	530 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	MAFA	Q8NHW3	353 aa	Predicted RBP	12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	TMEM47	Q9BQJ4	181 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	PPP1R12C	Q9BZL4	782 aa		12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	RANBP17	Q9H2T7	1088 aa	Known RBP	12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	GNE	Q9Y223	722 aa	Known RBP	12.43	□□□□□ -0.42
LSM4-205	ENST00000597776	TRIM6-TRIM34	B2RNG4	842 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	NFIB	O00712	420 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	DYNC1LI2	O43237	492 aa	Predicted RBP	12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	TOP1	P11387	765 aa	Known RBP	12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	CSF2RA	P15509	400 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	BAAT	Q14032	418 aa	Predicted RBP	12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	FSCN1	Q16658	493 aa	Known RBP	12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	MFSD5	Q6N075	450 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	TAPT1	Q6NXT6	567 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	C16orf59	Q7L2K0	433 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	TBC1D10C	Q8IV04	446 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	AP5M1	Q9H0R1	490 aa		12.42	□□□□□ -0.42
LSM4-205	ENST00000597776	GRIN2D	O15399	1336 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	CCDC171	Q6TFL3	1326 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	CD4	P01730	458 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	ACR	P10323	421 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	PDHB	P11177	359 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	DNAJB2	P25686	324 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	CYP2C18	P33260	490 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	PPIG	Q13427	754 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	TMEM240	Q5SV17	173 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	B4GALNT3	Q6L9W6	998 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	BTNL9	Q6UXG8	535 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	SLC30A10	Q6XR72	485 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	RILPL2	Q969X0	211 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	COL25A1	Q9BXS0	654 aa	Predicted RBP	12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	TCP11L1	Q9NUJ3	509 aa		12.41	□□□□□ -0.42
LSM4-205	ENST00000597776	ZMYM6	O95789	1325 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	UMODL1	Q5DID0	1318 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	PTPDC1	A2A3K4	754 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	GRXCR1	A8MXD5	290 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	TLR3	O15455	904 aa	Known RBP	12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	FOSL2	P15408	326 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	PSMC6	P62333	389 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	ITGA7	Q13683	1181 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	GRIN2C	Q14957	1233 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	IQSEC1	Q6DN90	963 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	KIAA1211	Q6ZU35	1233 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	SLC43A3	Q8NBI5	491 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	MORC4	Q8TE76	937 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	CLEC4D	Q8WXI8	215 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	TRPV6	Q9H1D0	765 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	VTA1	Q9NP79	307 aa		12.4	□□□□□ -0.42
LSM4-205	ENST00000597776	NEDD4	P46934	1319 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	TMEM265	A0A087WTH1	108 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	CABYR	O75952	493 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	SDS	P20132	328 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	CALML3	P27482	149 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	PBX2	P40425	430 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	ALDH5A1	P51649	535 aa	Predicted RBP	12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	ZNF543	Q08ER8	600 aa		12.39	□□□□□ -0.43
LSM4-205	ENST00000597776	AKNAD1	Q5T1N1	836 aa		12.39	□□□□□ -0.43

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