RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 KCNA10Q16322 511 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 CCDC96Q2M329 555 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 C9orf50Q5SZB4 431 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 TAPT1Q6NXT6 567 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 MFSD6Q6ZSS7 791 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 Q7L0L9 218 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 CYB5R4Q7L1T6 521 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 MSL3Q8N5Y2 521 aaKnown RBP12.36□□□□□ -0.43
LIG1-213ENST00000596672 ANKS1AQ92625 1134 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 UBA5Q9GZZ9 404 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 UPF3AQ9H1J1 476 aaKnown RBP12.36□□□□□ -0.43
LIG1-213ENST00000596672 SENP2Q9HC62 589 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 ZSWIM5Q9P217 1185 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 CHD9Q3L8U1 2897 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 MYH6P13533 1939 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 KBTBD13C9JR72 458 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 POTEB2H3BUK9 544 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 ICAM1P05362 532 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 CHMLP26374 656 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 ACLYP53396 1101 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 BEX3Q00994 111 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 IKQ13123 557 aaPredicted RBP12.35□□□□□ -0.43
LIG1-213ENST00000596672 BAATQ14032 418 aaPredicted RBP12.35□□□□□ -0.43
LIG1-213ENST00000596672 C1orf53Q5VUE5 145 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 SLC30A10Q6XR72 485 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 STOX1Q6ZVD7 989 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 ENAHQ8N8S7 591 aaPredicted RBP12.35□□□□□ -0.43
LIG1-213ENST00000596672 DSCC1Q9BVC3 393 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 UBE2OQ9C0C9 1292 aaKnown RBP12.35□□□□□ -0.43
LIG1-213ENST00000596672 DIAPH3Q9NSV4 1193 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 FBXO40Q9UH90 709 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 FAM184BQ9ULE4 1060 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 GNEQ9Y223 722 aaKnown RBP12.35□□□□□ -0.43
LIG1-213ENST00000596672 CNPY2Q9Y2B0 182 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 EYSQ5T1H1 3165 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 GRIN2DO15399 1336 aa12.35□□□□□ -0.43
LIG1-213ENST00000596672 PRUNE2Q8WUY3 3088 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 ZNF213O14771 459 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 DUSP11O75319 330 aaKnown RBP12.34□□□□□ -0.43
LIG1-213ENST00000596672 FDX1P10109 184 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 SMPD1P17405 629 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 CDK7P50613 346 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 NKX3-2P78367 333 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 SEC23AQ15436 765 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 TKFCQ3LXA3 575 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 LRIT3Q3SXY7 679 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 EEPD1Q7L9B9 569 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 TDHQ8IZJ6 230 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 MORC4Q8TE76 937 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 BADQ92934 168 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 TTC14Q96N46 770 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 ABHD16BQ9H3Z7 469 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 CCPG1Q9ULG6 757 aa12.34□□□□□ -0.43
LIG1-213ENST00000596672 CTDP1Q9Y5B0 961 aaPredicted RBP12.34□□□□□ -0.43
LIG1-213ENST00000596672 CYP21A2P08686 494 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 CST5P28325 142 aaPredicted RBP12.33□□□□□ -0.44
LIG1-213ENST00000596672 GJA9P57773 515 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 FAAP100Q0VG06 881 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 SHHQ15465 462 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 NSMFQ6X4W1 530 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 DGKHQ86XP1 1220 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 FBXO16Q8IX29 292 aaPredicted RBP12.33□□□□□ -0.44
LIG1-213ENST00000596672 STAG2Q8N3U4 1231 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 COL20A1Q9P218 1284 aa12.33□□□□□ -0.44
LIG1-213ENST00000596672 UNC80Q8N2C7 3258 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 OPLAHO14841 1288 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 PPP1R11O60927 126 aaPredicted RBP12.32□□□□□ -0.44
LIG1-213ENST00000596672 ASGR1P07306 291 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 PCP11498 1178 aaKnown RBP12.32□□□□□ -0.44
LIG1-213ENST00000596672 RNF180Q86T96 592 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 PNMA1Q8ND90 353 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 ESR2Q92731 530 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 ZSCAN10Q96SZ4 725 aaPredicted RBP12.32□□□□□ -0.44
LIG1-213ENST00000596672 TSEN34Q9BSV6 310 aaKnown RBP12.32□□□□□ -0.44
LIG1-213ENST00000596672 GPHNQ9NQX3 736 aaPredicted RBP12.32□□□□□ -0.44
LIG1-213ENST00000596672 TNKSO95271 1327 aa12.32□□□□□ -0.44
LIG1-213ENST00000596672 KIAA0355O15063 1070 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 PQBP1O60828 265 aaKnown RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 C6orf222P0C671 652 aaPredicted RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 ALDH5A1P51649 535 aaPredicted RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 ANTXR2P58335 489 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 RPS6P62753 249 aaKnown RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 PPP4R3BQ5MIZ7 849 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 C16orf59Q7L2K0 433 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 ANKRD33Q7Z3H0 272 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 ADGRF4Q8IZF3 695 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 PPP1R13LQ8WUF5 828 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 VWCEQ96DN2 955 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 RNF41Q9H4P4 317 aaPredicted RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 JMJD4Q9H9V9 463 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 PRDM5Q9NQX1 630 aaPredicted RBP12.31□□□□□ -0.44
LIG1-213ENST00000596672 TBX21Q9UL17 535 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 CHD7Q9P2D1 2997 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 TTC28Q96AY4 2481 aa12.31□□□□□ -0.44
LIG1-213ENST00000596672 RBM47A0AV96 593 aaKnown RBP12.3□□□□□ -0.44
LIG1-213ENST00000596672 HIP1O00291 1037 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 SGSM2O43147 1006 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 NEFLP07196 543 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 EDNRBP24530 442 aa12.3□□□□□ -0.44
LIG1-213ENST00000596672 MFAP1P55081 439 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms