RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 FOXP2O15409 715 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 SMPD1P17405 629 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 MCCP23508 829 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 SLC1A4P43007 532 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 PDE4BQ07343 736 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 PPARAQ07869 468 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 ITGA7Q13683 1181 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 RAB30Q15771 203 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 FSCN1Q16658 493 aaKnown RBP11.85□□□□□ -0.51
LIG1-209ENST00000596104 TMEM63BQ5T3F8 832 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 TAPT1Q6NXT6 567 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 NOL8Q76FK4 1167 aaKnown RBP11.85□□□□□ -0.51
LIG1-209ENST00000596104 ATXN2LQ8WWM7 1075 aaKnown RBP11.85□□□□□ -0.51
LIG1-209ENST00000596104 VWCEQ96DN2 955 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 TRERF1Q96PN7 1200 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 NOC4LQ9BVI4 516 aaKnown RBP11.85□□□□□ -0.51
LIG1-209ENST00000596104 NACAP1Q9BZK3 213 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 WNT8AQ9H1J5 351 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 PDGFCQ9NRA1 345 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 CYP39A1Q9NYL5 469 aa11.85□□□□□ -0.51
LIG1-209ENST00000596104 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.85□□□□□ -0.51
LIG1-209ENST00000596104 YBX2Q9Y2T7 364 aaKnown RBP11.85□□□□□ -0.51
LIG1-209ENST00000596104 MYH7P12883 1935 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 TNFRSF10AO00220 468 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 DYNC1LI2O43237 492 aaPredicted RBP11.84□□□□□ -0.51
LIG1-209ENST00000596104 B4GALT4O60513 344 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 FGBP02675 491 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 ALAS1P13196 640 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 CCL23P55773 120 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 SNAP25P60880 206 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 MUM1L1Q5H9M0 696 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 ZMYM1Q5SVZ6 1142 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 IQSEC1Q6DN90 963 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 KCTD1Q719H9 257 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 RASGRP2Q7LDG7 609 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 FBXO16Q8IX29 292 aaPredicted RBP11.84□□□□□ -0.51
LIG1-209ENST00000596104 PI4K2BQ8TCG2 481 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 MORC4Q8TE76 937 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 PPM1EQ8WY54 764 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 CHMP4CQ96CF2 233 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 ASB2Q96Q27 587 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 SEZ6LQ9BYH1 1024 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 AP5M1Q9H0R1 490 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 NAPBQ9H115 298 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 TRPV6Q9H1D0 765 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 MTIF3Q9H2K0 278 aaKnown RBP11.84□□□□□ -0.51
LIG1-209ENST00000596104 NKX2-4Q9H2Z4 354 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 IL17RBQ9NRM6 502 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 THEGQ9P2T0 379 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 MSRAQ9UJ68 235 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 PRR12Q9ULL5 1215 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 ISY1Q9ULR0 285 aaKnown RBP11.84□□□□□ -0.51
LIG1-209ENST00000596104 Q9Y3F1 56 aa11.84□□□□□ -0.51
LIG1-209ENST00000596104 SLC3A2P08195 630 aaKnown RBP11.83□□□□□ -0.52
LIG1-209ENST00000596104 NOVP48745 357 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 PSMC6P62333 389 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 IKQ13123 557 aaPredicted RBP11.83□□□□□ -0.52
LIG1-209ENST00000596104 LRRFIP1Q32MZ4 808 aaKnown RBP11.83□□□□□ -0.52
LIG1-209ENST00000596104 RCSD1Q6JBY9 416 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 EEPD1Q7L9B9 569 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 OTOP2Q7RTS6 562 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 PURBQ96QR8 312 aaKnown RBP11.83□□□□□ -0.52
LIG1-209ENST00000596104 TTC41PQ6P2S7 1318 aa11.83□□□□□ -0.52
LIG1-209ENST00000596104 ZEB2O60315 1214 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 NMT2O60551 498 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 PPP4R3BQ5MIZ7 849 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 OTUD7AQ8TE49 926 aaPredicted RBP11.82□□□□□ -0.52
LIG1-209ENST00000596104 ALDH8A1Q9H2A2 487 aaPredicted RBP11.82□□□□□ -0.52
LIG1-209ENST00000596104 SLC28A3Q9HAS3 691 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 VTA1Q9NP79 307 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 INCENPQ9NQS7 918 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 STX8Q9UNK0 236 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 MUC3AQ02505 3323 aa11.82□□□□□ -0.52
LIG1-209ENST00000596104 TSPY2A6NKD2 308 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 ICAM1P05362 532 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 IGFBP4P22692 258 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 RABGGTBP53611 331 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 MRPS5P82675 430 aaKnown RBP11.81□□□□□ -0.52
LIG1-209ENST00000596104 CTDSPL2Q05D32 466 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 CCDC85BQ15834 202 aaPredicted RBP11.81□□□□□ -0.52
LIG1-209ENST00000596104 DUSP28Q4G0W2 176 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 DIEXFQ68CQ4 756 aaKnown RBP11.81□□□□□ -0.52
LIG1-209ENST00000596104 NSMFQ6X4W1 530 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 KIAA1211Q6ZU35 1233 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 ADAMTS19Q8TE59 1207 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 FSD1Q9BTV5 496 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 RANBP17Q9H2T7 1088 aaKnown RBP11.81□□□□□ -0.52
LIG1-209ENST00000596104 ANAPC4Q9UJX5 808 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 CCPG1Q9ULG6 757 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 SLC4A7Q9Y6M7 1214 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 MCM3APO60318 1980 aa11.81□□□□□ -0.52
LIG1-209ENST00000596104 LRRC37A2A6NM11 1700 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 RBM47A0AV96 593 aaKnown RBP11.8□□□□□ -0.52
LIG1-209ENST00000596104 NFIBO00712 420 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 ERC2O15083 957 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 FGRP09769 529 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 MYOGP15173 224 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 COL9A1P20849 921 aa11.8□□□□□ -0.52
LIG1-209ENST00000596104 ALDH5A1P51649 535 aaPredicted RBP11.8□□□□□ -0.52
LIG1-209ENST00000596104 BAATQ14032 418 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms